Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00092 ATGGCCAAAAGTCTTGGCCTAATCATTGTCTTCATATCCTTACTTTCTCTGTCTTCCCCAACCCTTTCAACCATTTTCTCCAATACCATTGATTTTTGGTGCAACAAAACCCCACATCCTCAAACATGCAAGCATTTTGCCACAATAACTAATCATCACCTTCAACATAGTATCCCAAAAAGTGCATTTCAATTCAAGAACCTCATCCTTAGAATTGCAATGGACCAATCAGTGAAAGCCCAAATTCACATCACGTGGTTGGGCTCAAAATGTAGAAGCAAGCAAGAAAAAGCAGCATGGTCAGATTGCATGACCCTCTATCAAGACACCATCAACATTCTCAACCAGGCACTCAACCCTACCAAACAAAGCACAAGCTATGATCTCCAAACATGGCTTAGCACAGCCTTAACCAACATTGACACGTGCCAAACCGGGTTCCACGAGCTTGGGGTTGGCAACAATGTTCTAACCCTCATTCCCAACAAGAATATCTCAGAGATCATAAGCGACTTTTTGGCCCTTAACAATGCTTCCTCATTTATTCCTCCAAAGACTAACAAAAATGGCTTCCCAAGATGGTTATCACCCAATGATAGGAAGCTTCTAGAGTCACCATCGTTATCACCAGATGTTGTGGTGGCTAAAGATGGTTCAGGGGATTTTAAGACCATCAATGAAGCTTTGAGAGCAGTTCCCAAGATGAGTCTAAAGAGGTTTGTGATATATGTTAAGCGTGGGGTTTACAATGAAAACATTGAGATTGGGAATTCTATGAAGAATATTTTGTTGTATGGTGATGGTACAAGGCTCACCATCATTTCTGGTAGCCGAAGTGTTGGAGGAGGCTCTACCACTTTTAATTCGGCCACGTTTGCTGTGACAGGAGATGGGTTCATTGCACGTGGCATCACATTCCGCAACACAGCTGGCCCAGAAAACCACCAAGCAGTGGCACTGCGTTGTGGTGCTGACCTCTCTGTCTTCTATCGCTGTGCGTTTGAAGGGTACCAAGACACTCTCTATGTCCACTCCCAAAGACAGTTCTACAAGGATTGCTACATTTATGGCACAGTGGACTTCATCTTTGGCAATGCCGCTGTGGTCTTCCAAAGCTGCAATATATATGCAAGAAGGCCAATGCAAAAGCAGAAAAATGCCATAACAGCACAAGGTAGTAGAACAGATCCAAATCAAAACACTGGGATTTGCATTCAAAACTCGCGTGTTATGGCTGCTGAAGACCTAGTCCCTGTGCTGAGTTCCTTCAAAACCTTCTTGGGCAGGCCATGGAGGGAGTATTCAAGGACCGTGTTCTTGCAAACTTACCTTGATGCGTTGGTAGACCCTGCAGGGTGGTTGGAGTGGAAAGGCGATTTTGCCCTCGGCACTTTGTATTATGGAGAGTACAAGAACCTAGGTCCTAGGGGTTCCACAAGAGGTAGAGTGAAATGGCGTGGTTACCGTGCCATAACAAGTGCAACCGAAGCATCCAAATTCACGGTTGAGAATTTTATTGCTGGGAAATCATGGCTACCTGACACAGGCATTCCATTCTTATCGGGACTCTATGATTAA 1578 0.4449 MAKSLGLIIVFISLLSLSSPTLSTIFSNTIDFWCNKTPHPQTCKHFATITNHHLQHSIPKSAFQFKNLILRIAMDQSVKAQIHITWLGSKCRSKQEKAAWSDCMTLYQDTINILNQALNPTKQSTSYDLQTWLSTALTNIDTCQTGFHELGVGNNVLTLIPNKNISEIISDFLALNNASSFIPPKTNKNGFPRWLSPNDRKLLESPSLSPDVVVAKDGSGDFKTINEALRAVPKMSLKRFVIYVKRGVYNENIEIGNSMKNILLYGDGTRLTIISGSRSVGGGSTTFNSATFAVTGDGFIARGITFRNTAGPENHQAVALRCGADLSVFYRCAFEGYQDTLYVHSQRQFYKDCYIYGTVDFIFGNAAVVFQSCNIYARRPMQKQKNAITAQGSRTDPNQNTGICIQNSRVMAAEDLVPVLSSFKTFLGRPWREYSRTVFLQTYLDALVDPAGWLEWKGDFALGTLYYGEYKNLGPRGSTRGRVKWRGYRAITSATEASKFTVENFIAGKSWLPDTGIPFLSGLYD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00092 525 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
Pumo11g00092 525 NCBIfam pectinesterase inhibitor domain 1 176 IPR006501 GO:0004857
Pumo11g00092 525 SMART PMEI_2 25 175 IPR006501 GO:0004857
Pumo11g00092 525 Pfam Pectinesterase 211 508 IPR000070 GO:0030599|GO:0042545
Pumo11g00092 525 CDD PMEI-like_3 33 178 - -
Pumo11g00092 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 177 IPR035513 -
Pumo11g00092 525 SUPERFAMILY Pectin lyase-like 208 522 IPR011050 -
Pumo11g00092 525 PANTHER PECTINESTERASE 17 513 - -
Pumo11g00092 525 Gene3D - 205 523 IPR012334 -
Pumo11g00092 525 ProSitePatterns Pectinesterase signature 2. 355 364 IPR033131 -
Pumo11g00092 525 FunFam Pectinesterase 205 523 - -
Pumo11g00092 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 178 IPR035513 -
Pumo11g00092 525 Pfam Plant invertase/pectin methylesterase inhibitor 29 174 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00092 Pumo-Chr11 2870816 2874416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00092 8 523 Carbohydrate Esterase AT2G45220 57.447 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00092 K01051 - gmx:100776412 952.199