Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00080 ATGGGGAGGGCTCCTTGCTGTGATAAAGCCAATGTCAAGAGAGGTCCATGGTTGCCTGAAGAAGACACCAAACTCAAATCTTATATTGAAGAGCATGGCACTGGTGGCAACTGGATAGCCTTGCCTCAGAAAATAGGCCTCAAAAGGTGTGGGAAAAGCTGTCGTCTCAGATGGCTGAACTATCTTCGCCCAGACATCAAACACGGAGGTTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTGTATGTTACCATTGGAAGCAGGTGGTCTATTATAGCAGCGCAGTTACCAGGGCGCACAGATAATGACATAAAGAACTATTGGAACACTAAGCTGAAGAAGAAGCTACTAGGGAAGCAAAGGAAGGAGCAACAGGCTCGAGCTCGAAAAGTTTGTAGCCTAAAGCAAGAGATCAAGAGAGAAAGTGAAGATTTGATGTTACCTGTGGGAGTTATTGCCCGAACTCCTTATTGGCCCATTCCAGTGGCAAATGCTTCCATCCAATACTCCGATCTCAACAATCAAACATCATCAACCAGAAACTTCCCTAACAACATAGTCACTGCCACCATGAACTCACAACACACATCGTGTGACATTTCTTTCACACAAGACCAGCTATTTCCCTCCACGATGAACATGGTAACAGCCACGGACACGTGTCACACATCAAACGTATTTCAAGGGTTTGAGAACTTTTCCAGTGATTTGGCCTGTGTGAACCCGCAACAAATAGATGGACCAATGCGGGTTTTTTATGGATTGGAAACAACCATGGCGCTGGCAAATGGTAGCACAAACACGACTTCAACAGAAAGCACTAGTTGGGGAGATATAAGCTCTTTGCTTTCTGACTACGAAGCTTGCCAACAAACAATAATACCTCAAGGATGTTACTTTCGAGGACTCTAG 915 0.4481 MGRAPCCDKANVKRGPWLPEEDTKLKSYIEEHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPDIKHGGFSEEEDNIICSLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKEQQARARKVCSLKQEIKRESEDLMLPVGVIARTPYWPIPVANASIQYSDLNNQTSSTRNFPNNIVTATMNSQHTSCDISFTQDQLFPSTMNMVTATDTCHTSNVFQGFENFSSDLACVNPQQIDGPMRVFYGLETTMALANGSTNTTSTESTSWGDISSLLSDYEACQQTIIPQGCYFRGL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00080 304 SMART sant 13 64 IPR001005 -
Pumo11g00080 304 SMART sant 67 115 IPR001005 -
Pumo11g00080 304 CDD SANT 71 111 IPR001005 -
Pumo11g00080 304 Gene3D - 70 144 - -
Pumo11g00080 304 PANTHER OS09G0431300 PROTEIN 1 234 - -
Pumo11g00080 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo11g00080 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pumo11g00080 304 CDD SANT 16 62 IPR001005 -
Pumo11g00080 304 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo11g00080 304 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo11g00080 304 Gene3D - 7 68 - -
Pumo11g00080 304 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pumo11g00080 304 FunFam Transcription factor RAX3 7 68 - -
Pumo11g00080 304 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pumo11g00080 304 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo11g00080 304 FunFam Transcription factor RAX3 70 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00080 Pumo-Chr11 2576044 2577334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00080 1 284 MYB Transcription Factor Family AT3G49690 48.137 1.56e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g00080 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00080 K09422 - gmx:100792374 470.314