Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00067 ATGCGGCCTGGGCGGAGAAGGTATGTTGGAGCTTCGGCGGAGAGGGAATCTAAGCATTTTCTCAAGATCATACTTCCCTCAGCCATTCATGCCAACCAAATGAGAATTCCAGAGGAATTTTTAGAAAGATTTGGAGATGAACTATCAACTGTTGCTACAATTACTGTTCCCGATGGTCGTGTTTGGAAAATGAGGTTGAAGAAATGTGGTAAAGATGTTTTGCTCTGCAGCAAATGGCGAGAGTTTGTAAAATACTATTCTCTCAGTTATGGTTCCTACCTAGTTTTCAGATATGAAGGGAATTCAAAATTTCGTGTTCTGATATTTGATATTACTTCTGCTGAGATTTGTTATCCTCGGGGCACTAGTGGAGAACCAAACTTGGACAATAGGAAGAGGTCAAAGGTTGATGAAGATGATGTGAATTTAAAAGTTATGTATGTTTTGTTTTGTGTTCAAATCTCCCCTTCCTTTTTGCAGTATGTGGGAAGTCAGTTTTCTATCAAGTATCTGAAGCCAAATGCTGGTATGATGCTCCAAAATTGTAATGGGGAACAGTGGGATGTGTATTGCACATGTCATAATGCGCGCTACAGAGGAATGATGATAACGAGAGGATGGGCTAAATTTGTAAGGGACAACAATCTATCAGAAGGAGATCCTTGTGTATTGGAGTTGATCAAGAGGAAGCCGGTTTACTCTACTCTCCGGATAGAATCCCTTATTATTCCAATGCAGCCTGGTCGGAGAAGGTATGTTGGAGCTTCGGCGGAGAGGGAATCTAAGCATTTTCTCAAGATCATACTTCCCTCAGCCATCCATGCCAATCAAATGAGAATTCCCGAGGAATTTATAAAAAGATTTGGAGATCATGAACTATCAAATGTTGCAACAATTACTGTTCCCGATGGTCGTGTTTGGAAAATGAGGTTGAAGAAATGTGGTAAAGATGTTTTGTTCTGCAGCAAATGGCGACAGTTTGTAAAATACTATTCTCTCAGTTATGGTTCCTACCTAGTTTTCAGATATGAAGGGAATTCAAAATTTCATGTTCTTATATTTGATATTACTTCTGCTGAGATTTGTTATCCATGCAAAACTTGGGGCACTAGCGGAGAACCAAACTTAGACAACAAGGTTGATGTGAATTTAAAAAGTCAGAGCAAACCAAGGAAGACAGGAAGTTGTTCTTCTCATGGGAAACAAGTCAATAGATTCAAGCCAAAAAACCCTTCTGTTACTTCAACCATCAGGGGTCGTTACTTGTATGTGCCAAGTAAATTTGCTGGTAAGTATCTGAAGCCAAATGTTTGTGTGATGCTCCAAAATTGTAACGGGGAGCAGTGGGATGTTTCTTGCATGCATCATAGTGCGTGCAACAGAGCAGTGATGATAGCGAGGGGATGGACTAAATTTGTAAGGGACAACCATCTATCAGAAGGAGATCCTTGTGAGTTGGAGTTGATCAAGAGCAACCCGGTTGTGCTAAAACTTACTGTGCAGTGCACCAACTAG 1515 0.4059 MRPGRRRYVGASAERESKHFLKIILPSAIHANQMRIPEEFLERFGDELSTVATITVPDGRVWKMRLKKCGKDVLLCSKWREFVKYYSLSYGSYLVFRYEGNSKFRVLIFDITSAEICYPRGTSGEPNLDNRKRSKVDEDDVNLKVMYVLFCVQISPSFLQYVGSQFSIKYLKPNAGMMLQNCNGEQWDVYCTCHNARYRGMMITRGWAKFVRDNNLSEGDPCVLELIKRKPVYSTLRIESLIIPMQPGRRRYVGASAERESKHFLKIILPSAIHANQMRIPEEFIKRFGDHELSNVATITVPDGRVWKMRLKKCGKDVLFCSKWRQFVKYYSLSYGSYLVFRYEGNSKFHVLIFDITSAEICYPCKTWGTSGEPNLDNKVDVNLKSQSKPRKTGSCSSHGKQVNRFKPKNPSVTSTIRGRYLYVPSKFAGKYLKPNVCVMLQNCNGEQWDVSCMHHSACNRAVMIARGWTKFVRDNHLSEGDPCELELIKSNPVVLKLTVQCTN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00067 504 ProSiteProfiles B3 DNA-binding domain profile. 263 357 IPR003340 GO:0003677
Pumo11g00067 504 CDD B3_DNA 18 110 IPR003340 GO:0003677
Pumo11g00067 504 CDD B3_DNA 414 492 IPR003340 GO:0003677
Pumo11g00067 504 SUPERFAMILY DNA-binding pseudobarrel domain 150 230 IPR015300 -
Pumo11g00067 504 SUPERFAMILY DNA-binding pseudobarrel domain 258 356 IPR015300 -
Pumo11g00067 504 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Pumo11g00067 504 CDD B3_DNA 149 233 IPR003340 GO:0003677
Pumo11g00067 504 CDD B3_DNA 262 355 IPR003340 GO:0003677
Pumo11g00067 504 ProSiteProfiles B3 DNA-binding domain profile. 177 240 IPR003340 GO:0003677
Pumo11g00067 504 SMART B3_2 150 239 IPR003340 GO:0003677
Pumo11g00067 504 SMART B3_2 20 112 IPR003340 GO:0003677
Pumo11g00067 504 SMART B3_2 264 357 IPR003340 GO:0003677
Pumo11g00067 504 SMART B3_2 412 501 IPR003340 GO:0003677
Pumo11g00067 504 MobiDBLite consensus disorder prediction 386 410 - -
Pumo11g00067 504 Gene3D - 11 113 IPR015300 -
Pumo11g00067 504 Gene3D - 255 358 IPR015300 -
Pumo11g00067 504 ProSiteProfiles B3 DNA-binding domain profile. 407 504 IPR003340 GO:0003677
Pumo11g00067 504 SUPERFAMILY DNA-binding pseudobarrel domain 411 492 IPR015300 -
Pumo11g00067 504 Gene3D - 397 503 IPR015300 -
Pumo11g00067 504 Gene3D - 129 240 IPR015300 -
Pumo11g00067 504 SUPERFAMILY DNA-binding pseudobarrel domain 14 111 IPR015300 -
Pumo11g00067 504 PANTHER B3 DOMAIN-CONTAINING 13 230 - -
Pumo11g00067 504 Pfam B3 DNA binding domain 417 492 IPR003340 GO:0003677
Pumo11g00067 504 Pfam B3 DNA binding domain 264 355 IPR003340 GO:0003677
Pumo11g00067 504 Pfam B3 DNA binding domain 20 110 IPR003340 GO:0003677
Pumo11g00067 504 Pfam B3 DNA binding domain 162 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00067 Pumo-Chr11 2181922 2194726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00067 385 500 B3 DNA Binding Superfamily AT3G18990 30.400 4.21e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo11g00067 B3 7.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00067 - - mtr:11408476 446.817