Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00054 ATGGAGTCAGGTCCTCCGGCGAACGATTTGTGTTCGGTGTGCCATGGCAACTTTCACATTCCCTGCCAAGCCAATTGTTCTCACTGGTTTTGCGGAAACTGCATAATGCTTGTGTGGCAGCACGGATCAGTGGCTCGTTCTTGCAAGTGCCCCCTGTGTCGGCGAGCCATCACTCTGTTAGTCCCGACCGAAGAGTCTGAGAGGCAGCGGCATGACCCTGAAGTTGGTCAGATTCTCTCCAAAATTCATGCCTATAACCGTTTCTTTGGTGGCCAATCCACCAGTCTTTATCAGAGACTGCGAGATCTTCCGTTTCTGCTGCACAGGCTGCTGCGGGAATTCATCGACCCTCAAAGATCCCTTCCTCTTGTCATTCGTGCTCGTGTCTTTGTTGCTATGATAGTAAGTGCTATATACCTCTTCAGCCCTATTGACATCATTCCTGAAGGGATATTAGGAATAGTTGGTTTCTTAGATGATCTCCTAATTGTGCTCATCTGCTTCCTACATGTTGCTGCCCTTTATAGATCAGTACTCTACCGTCCGTCATGGGGGTTCCTGAACATGTTCTACAATTTTATAGGTGAAAGTGGTAAAATGAGATGA 606 0.4769 MESGPPANDLCSVCHGNFHIPCQANCSHWFCGNCIMLVWQHGSVARSCKCPLCRRAITLLVPTEESERQRHDPEVGQILSKIHAYNRFFGGQSTSLYQRLRDLPFLLHRLLREFIDPQRSLPLVIRARVFVAMIVSAIYLFSPIDIIPEGILGIVGFLDDLLIVLICFLHVAALYRSVLYRPSWGFLNMFYNFIGESGKMR 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00054 201 ProSiteProfiles Zinc finger RING-type profile. 11 54 IPR001841 -
Pumo11g00054 201 SMART ring_2 11 53 IPR001841 -
Pumo11g00054 201 Pfam Protein of unknown function (DUF1232) 131 165 IPR010652 -
Pumo11g00054 201 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Pumo11g00054 201 PANTHER UNCHARACTERIZED 3 180 IPR038896 GO:0061630
Pumo11g00054 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 97 IPR013083 -
Pumo11g00054 201 SUPERFAMILY RING/U-box 9 62 - -
Pumo11g00054 201 CDD RING-HC_RNF113A_B 5 62 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00054 36 180 C3H Transcription Factor Family AT1G72175 70.345 2.42e-62 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00054 K15707 - gmx:100306204 332.798