Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00037 ATGAATGTGACAAATAAGCCAAACCCAGGTGGTTCCACCAATGGGTTTCAGTCTCAGTCTCAGCTTCAACAACAACAACAACTACAAAATGGGTGGGAGCAGGGATCATCTAGACTCAGACCCACTAAACCTTACCCTGCACCAACGGCTCGCTACCAGGACATTGTTCGTGATGCAAACCTCTTCTGGGGAGCGCTTCAAGCTTTTCACAAATCACTTGGCACCAAATACAAGGTTGCTACTGTGGGAGGAAAGTCACTTGATCTACATCGCCTTTTTGTGGAAGTTACATCTCGTGGTGGGATTGAAAAGGTGATTGTTGATCGTAGGTGGAAGGAAGTGATTCTGACGTTCAATTTCAAAGATACCATAACAAGTGCATCATTTGTGGTGCGCAAATCCTATCTATCAATGCTATATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCATTCCTCCCCGAACACCTGATCTTATGATTAGAGGCCAATCAGGCCAACCCTATAGCTGCACAACCATTCCGGAAGTTGCTGCTGTGAATGATTCACCTGTTCAGAGTACTCCAGTACAGGCGTATGATGCTATGGTTTCTGGAACAATTGATGCGAAATTTGATGGTGGATATGTAGTTACAGTGACTCTTGGTTCTGATCAGCTGAAAGGTGTCCTGTTTCATGTTCCTGATAACGTGTCCCAGAGTTCTCATACCGAAGGCACATCTAGTTCACAGAATCTTGGTGAAGGCACGTCTAATTCACAGAGTCGAAAGAGGGCAAAATATGCACCACGCGATCCATTTCGGCCAAAGTCAAACAGGAGCGGTTACAACTTCTTCTTTGCTGAGAATTATGCCAGGCTGAAGCCCTCATATCATGGGCAGGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTATGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGATGAGAGATAAGGAAAGATACAGGACTGAACTAATGGAGTACAAATCCAATAATTCAACTCCAAATGCTCAATAG 1041 0.4419 MNVTNKPNPGGSTNGFQSQSQLQQQQQLQNGWEQGSSRLRPTKPYPAPTARYQDIVRDANLFWGALQAFHKSLGTKYKVATVGGKSLDLHRLFVEVTSRGGIEKVIVDRRWKEVILTFNFKDTITSASFVVRKSYLSMLYHFEQVYYFGRQGIPPRTPDLMIRGQSGQPYSCTTIPEVAAVNDSPVQSTPVQAYDAMVSGTIDAKFDGGYVVTVTLGSDQLKGVLFHVPDNVSQSSHTEGTSSSQNLGEGTSNSQSRKRAKYAPRDPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGMRDKERYRTELMEYKSNNSTPNAQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00037 346 MobiDBLite consensus disorder prediction 1 37 - -
Pumo11g00037 346 Gene3D High mobility group box domain 252 345 IPR036910 -
Pumo11g00037 346 SUPERFAMILY ARID-like 55 155 IPR036431 GO:0003677
Pumo11g00037 346 Pfam ARID/BRIGHT DNA binding domain 61 143 IPR001606 GO:0003677
Pumo11g00037 346 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 270 337 IPR009071 -
Pumo11g00037 346 SMART ARID_2 53 143 - -
Pumo11g00037 346 SUPERFAMILY HMG-box 269 340 IPR036910 -
Pumo11g00037 346 MobiDBLite consensus disorder prediction 232 258 - -
Pumo11g00037 346 Pfam HMG (high mobility group) box 270 337 IPR009071 -
Pumo11g00037 346 ProSiteProfiles ARID domain profile. 56 147 IPR001606 GO:0003677
Pumo11g00037 346 SMART hmgende2 269 338 IPR009071 -
Pumo11g00037 346 MobiDBLite consensus disorder prediction 1 45 - -
Pumo11g00037 346 CDD HMG-box_AtHMGB9-like 270 336 - -
Pumo11g00037 346 SMART bright_3 57 148 IPR001606 GO:0003677
Pumo11g00037 346 MobiDBLite consensus disorder prediction 232 271 - -
Pumo11g00037 346 Gene3D - 48 153 IPR036431 GO:0003677
Pumo11g00037 346 CDD ARID_HMGB9-like 58 143 IPR045303 GO:0003677
Pumo11g00037 346 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 22 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00037 Pumo-Chr11 1551702 1556679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00037 50 342 ARID Transcription Factor Family AT3G13350 49.664 7.76e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo11g00037 ARID 7.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00037 - - gmx:100793029 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00037 11 1551702 1556679 Pumo11g00037 11 1551702 1556679 ECH