Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00027 ATGACGTGGAAGCTCGAGGGTCGGAAATGGCTGTCAGTCAATGGCAGTGGCAGCAACAACAACAAAGGTTTCAGGGATTTGTTAAGGTTGTCGAGTCAGCGAAACAGTTTCAAGCGCATTGAAAAAGAAGAAGATAGAGATAGGGATAGGGATAGGGATAGGGATAGGGATAGAGATAGAAGAGATCAGAATCGGCATCACCACGATGTGGATCTTGATTCTTCTGTTGATGTGCTTGGGGACAGTGCACCTCCTGAATGGGCGTTGCTTCTCATTGGTTGCCTCATTGGACTCACCACTGGCCTCTTTGTTGCGCTTTTCAATAAAGGGGTGCATGTAATACATGAATGGGTATGGGCTGGTACTCCAGTTGAGGGTGCTGCCTGGCTTCGTATTCAGAGATTGGCTGATACATGGCATCGAATCCTTTTAATACCTGTCACTGGAGGAGTCATTGTCGGCATGATGTGTGGTTTACTTGAAATACTGGACCAAATAAAGCAGTCCACTTCCTCTCAAGCACAAGGTTTTGATTTTCTTGCAGGAATCTTTCCAACAATAAAGGCTATCCAGGCTGCAGTTACTTTAGGTACTGGCTGTTCATTGGGTCCTGAAGGTCCTAGTGTTGACATTGGGAAGTCATGTGCCAACGGATTCTCACTAATGATGGAACACAATAGAGAAAGGAAAATAGCACTTGTTGCGGCTGGTGCAGCAGCTGGTATTTCTTCAGGCTTCAATGCACCAGTTGCTGGTTGTTTCTTTGCTATTGAAACTGTGCTGAGGCCTCTTCGTGCAGAGAATTCTCCCCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATCTCGTCAACTGTATCAAATGTTTTACAGGGGATCCAATCAGCTTTTACAATACCTGAGTATGATTTGAAATCTGCTGCTGAGCTACCTTTATACCTGATATTGGGAATGCTATGTGGTGTTATAAGTGTGGCCTTGACTCGTTTGGTTGCTTGGTTCACCAAATTATTTAAGATTATTCAGGATAAGTTTGGCATTCCTACTGTGGTATGCCCTGCTTTAGGTGGCTTTGGAGCTGGGATCATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGAAGAAATTCTACGTACTGGAAAGAGTGCTTCAGCTCCTGGAATATGGCTTCTGGCTCAATTGGTAGCTGCTAAGGTTATTGCAACAGCTCTTTGCAAGGGATCTGGGCTAGTAGGTGGTCTTTATGCACCGAGTTTAATGATAGGTGCTGCAGCTGGTGCTGTATTTGGAGGCTTTTCTGCTGAAGTTATTAATTCAGCAATTCCTGGAAATGCCGCTGTTGCTCAGCCCCCGGCATATGCTCTGGTTGGAATGGCTGCGACATTAGCATCTGCTTGTTCTGTTCCTTTGACTTCAGTTCTACTTCTGTTTGAGCTGACAAAAGATTATAGGATATTGCTTCCACTCATGGGAGCTGTTGGATTGGCAATATGGGTTCCCTCAGTGACAAACCGGGTGAAGGAGAGTGAGACACCTGATTCAAGTAAATCAGCAAGAGGATATTCTCCAATTTCACATGCTGGAGATGATAATGAGGATAACTGGAGACAAGGCAATGATGGGAATGATTTAGAACTGCGTATTGTTGGAGATGGTGCTGATCTTGAACCAATTGATAAGGAACTGCTTCTGGACAATCTTCAGGTTTCTCAGGCCATGTCAAAACAATATCTGAAGGTTTTGTCATCTGCAACCCTGAAAGATGCAATAAAATGCATGCATGACAGCCAGCAGAATTGTGTGCTGGTGGTTGATAAAGAAGATTTTCTAGAAGGAATATTGACATATGGTGATGTTAAAAGGTGTCTATCCCAGAAGTCTAATGACACTTCGAAGAGCGATTCAGGGATCGTGGATCCAAACACATGCCTTGTTTCCACTGTTTGTACTCGAGGGATGAGCTACCGTGGACGAGAGCGAGGAATTTTAACCTGCTATCCAAATACTAGTTTGGCTATGGCCAAAGAGTTGATGGAGGCCAAGGGCATTAAGCAATTACCAGTGGTTAAACGTGGTGGAGATCAAAGTAGAGAAATGAAGAGGAGAATTGTTGGTCTTCTTCATTATGATGCACTATGGCAATGTCTCAGGAAAGAGATTAATCACCGGCAAACAGCCCATCACAATAGGACAGATAACAATTTGGCTGTGATAACAACAAATGGTCACTAA 2250 0.4373 MTWKLEGRKWLSVNGSGSNNNKGFRDLLRLSSQRNSFKRIEKEEDRDRDRDRDRDRDRDRRDQNRHHHDVDLDSSVDVLGDSAPPEWALLLIGCLIGLTTGLFVALFNKGVHVIHEWVWAGTPVEGAAWLRIQRLADTWHRILLIPVTGGVIVGMMCGLLEILDQIKQSTSSQAQGFDFLAGIFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEHNRERKIALVAAGAAAGISSGFNAPVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGIQSAFTIPEYDLKSAAELPLYLILGMLCGVISVALTRLVAWFTKLFKIIQDKFGIPTVVCPALGGFGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLAQLVAAKVIATALCKGSGLVGGLYAPSLMIGAAAGAVFGGFSAEVINSAIPGNAAVAQPPAYALVGMAATLASACSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTNRVKESETPDSSKSARGYSPISHAGDDNEDNWRQGNDGNDLELRIVGDGADLEPIDKELLLDNLQVSQAMSKQYLKVLSSATLKDAIKCMHDSQQNCVLVVDKEDFLEGILTYGDVKRCLSQKSNDTSKSDSGIVDPNTCLVSTVCTRGMSYRGRERGILTCYPNTSLAMAKELMEAKGIKQLPVVKRGGDQSREMKRRIVGLLHYDALWQCLRKEINHRQTAHHNRTDNNLAVITTNGH 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00027 749 Pfam Voltage gated chloride channel 169 505 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo11g00027 749 SMART cbs_1 667 723 IPR000644 -
Pumo11g00027 749 SMART cbs_1 582 630 IPR000644 -
Pumo11g00027 749 FunFam Chloride channel protein 77 521 - -
Pumo11g00027 749 CDD CBS_pair_voltage-gated_CLC_euk_bac 579 719 - -
Pumo11g00027 749 Gene3D - 562 722 IPR046342 -
Pumo11g00027 749 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo11g00027 749 PRINTS Chloride channel signature 475 494 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo11g00027 749 PRINTS Chloride channel signature 416 436 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo11g00027 749 PRINTS Chloride channel signature 188 207 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo11g00027 749 PRINTS Chloride channel signature 457 473 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo11g00027 749 Gene3D Clc chloride channel 75 518 - -
Pumo11g00027 749 ProSiteProfiles CBS domain profile. 579 636 IPR000644 -
Pumo11g00027 749 MobiDBLite consensus disorder prediction 514 545 - -
Pumo11g00027 749 MobiDBLite consensus disorder prediction 40 66 - -
Pumo11g00027 749 SUPERFAMILY Clc chloride channel 85 509 IPR014743 -
Pumo11g00027 749 CDD Voltage_gated_ClC 100 502 - -
Pumo11g00027 749 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 44 733 - -
Pumo11g00027 749 Pfam CBS domain 575 628 IPR000644 -
Pumo11g00027 749 Pfam CBS domain 667 714 IPR000644 -
Pumo11g00027 749 ProSiteProfiles CBS domain profile. 664 731 IPR000644 -
Pumo11g00027 749 FunFam Chloride channel protein 560 719 - -
Pumo11g00027 749 SUPERFAMILY CBS-domain pair 573 727 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00027 Pumo-Chr11 1425753 1437166 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00027 K03281 - gmx:100787625 1312.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00027 11 1425753 1437166 Pumo11g00027 11 1425753 1437166 ECH