Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00017 ATGGCTTCTTCGTCGAGTAGCGGATTGACGTTCAAGATGCACCCTCTGGTGATCGTGAACATCTCGGACCATTATACGAGGGTCAAGTCTCAGATGAACCCAACCCACGCGCCACCGCACAACAACAACAACAACAACAACGCGAACGGCGGCGACGGCGTCGTTTCGCCCCTGCCACCGCGGGTCTATGGGTGCGTCATAGGGGTCCAGAAGGGTCGCACCGTCGAGATCTTCAACAGCTTCGAACTCCTCTACGATCCTTCCACCCATTCCCTCGACCGCACCTTCCTCGAGAAGAAGCAAGAACTCTATAAGAAGGTGTTCCCGCACTTCTACATACTGGGGTGGTATTCGACTGGGAGTGATGCGGAGGAATCAGATATGCATATTCACAAAGCTTTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATCAATCATTCTCAGAAAGATCTACCAGTCTGTATTTATGAAAGTGAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTAGCTCAAGCTATACTATTGAGACTGTTGAAGCAGAACGGATATCAGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCTGCTACACAATTGGCTGCTCACCTTACTGGTATACACAGTGCCATCAAAATGCTTCATAGCAGAATAAAGGTGCTACATCACTATCTTCTTGCAATGCAAAAAGGTGATGTTCCTTGTGAGAATTCACTATTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGGAAATTTCAAGATGATTTCTTGATGGAGTACAATGACACCTTATTGATTAGTTACCTGGCAATGCTGACCAACTGCTCAAGTGCAATGAATGAGCTGGTGGACAAATTTAATACGGCGTATGATAGGCATAGCAGAAGGGGTGGACGAACTGCTTTTATGTGA 966 0.4555 MASSSSSGLTFKMHPLVIVNISDHYTRVKSQMNPTHAPPHNNNNNNNANGGDGVVSPLPPRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVCIYESELHVIDGIPQLIFVSSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNELVDKFNTAYDRHSRRGGRTAFM 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00017 321 ProSiteProfiles MPN domain profile. 11 168 IPR037518 -
Pumo11g00017 321 MobiDBLite consensus disorder prediction 30 54 - -
Pumo11g00017 321 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 3 312 - -
Pumo11g00017 321 MobiDBLite consensus disorder prediction 30 52 - -
Pumo11g00017 321 CDD MPN_CSN6 9 317 IPR033859 GO:0000338|GO:0008180
Pumo11g00017 321 Gene3D Cytidine Deaminase, domain 2 1 202 - -
Pumo11g00017 321 FunFam COP9 signalosome subunit 6 1 202 - -
Pumo11g00017 321 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 140 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pumo11g00017 321 SMART pad1_6 10 167 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pumo11g00017 321 Pfam Maintenance of mitochondrial structure and function 188 302 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00017 Pumo-Chr11 1288143 1298434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00017 2 272 Eukaryotic Initiation Factors Gene Family AT2G39990 22.101 1.34e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00017 K12179 - gmx:100797079 613.609