Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00014 ATGGCGATGCGCGACCTCGTTTCGGGTGCCGCCGCATGTGGCGACTCTTCTTCTTCCTCCGCAAACCCTCTCGCTTCCCTCGCCAACGCCCTTGTTGGCTCTTCCTCCAAAACTCAGGAGAGGCTTAAAGAGATTCCTACATCCACTCCCACTGACCCTGCCTCCCAATTTTACTCCACAACTCTCCCCCCCAATCACCTTCCTGGTTCTGAACTCGATAAACCTCTATTGAATGCAAACTCTCAGGCTTCGGAGTTTTTGCATAGGTTCCGTGGCACCACTGGGCTTGAGGAGACGTGGGATGAGATACAGCGCGAGGGCGCGATTACCCAACCGCGCCAACCGCTGCCGGGGATTCAACAGCCGCCTTTGGATGGGACGCCACAAAGAGTTCTGTCAAGCTTTTTGCACTCGTTTCTTGATAGCAGCCGTGGTGGAGTGCCTTTTCATCCTGCCCCTCTTCCGATGTTGGGTTTATCTGAAGGTGATAAACAATGCATACGTGACCGCAGCAGCATAATGGCCAGGCATCTCTTTGCGGATAAAAGCGAAGAATTTATTGATGCCCAAGTAAATGCGCTTCTATGCTCTCTAGATATTGACAGCAGTGTCCGTGGTAAGGGACCTATGCCTGAAAGATTTCGGGAGCTTGAGGATTACTGGAATGAGTCTCAAGGCAACCTGAGACTTGGTCCTCCTGCTGCAGATGGGTGGATTTCTGAATTTAGTCAACATAGGGAAAAATATGATAATCCTGATGCATGGGCTAACTCATTTGAGCAACAGTATGGTGCAAATGGTTGGGTGTCTGAATTTGAACACTCCCAATTGTCATCAGTAGATCAAATGCGAGGTATGAACATGTCAAACTTTGCTGCAATGGAGCAGACTCGTATGCTTGCAAACACATTGGCCCAAAATGGTGACCCTAAATTTCAGAACTCAAAATTCCTTCAATTTGTATCAAAGATGAGCCGTGGTGAGTTGATTATTGATGACAATCAAGTTAAAGAGAATGCATTACCTGCATCTGGAGATTGGGCAACAGAATATGATCAGCAATATAATCATGGTCATGCATGGGCTGGAGAATTTTTAAATGATAAGGTTTATCATGGACCTGATCAGTGGGCGAATGAATTTACAAGTGAAGGACGGCAGCATGATGCAGTTGATGATCAGTGGGTTAATGAATTCTCAAAGTTGAATGTTAATGATTGGGCAGATGAATTTGGTCAGCAGTTGGGTGAAGGAGCCTTAGGGGATAGCACTTCTGATAGTTGGGCACAGGCATATGATGAGTTCCTAAATGAGCAAGTTGCTGCCAAGCAGCAGTTAGACAGTTCGAGGGGCGTGTATGTCTTTTCAGATTTAAATCCTTATGTTGGTCATCCAAATCCGCTAAAAGAAGGCCAAGATCTATTCAGAAAAGGACTTTTAAGTGAAGCAGTTCTAGCATTGGAAGCTGAAGTCCTAAAAAACCCTGATAATGCTGAAGGGTGGAGACTGCTTGGAATAGCACATGCAGAGAATGATGATGATCAACAGGCTATTGCAGCAATGATGCGTGCACAGGAGGCTGACCCAACAAACCTGGAAGTGCTTCTTGCTCTTGGTGTTAGTCATACAAATGAACTGGAGCAAACAGCTGCTCTGAAGTATCTATATGGATGGTTGCGCCATCACCCAAAGTATGGAACACTTGCCCCGCCTGAGATGGCTGATTCTTTGTACTATGCTGATGTTGCTAGGTTATTCAATGAAGCAGCTGAACTCTCACCTGATGATGCAGACGTCCACATAGTTCTAGGGGTCATGTACAACTTATCCAGAGAATATGAAAAAGCCATTGCATCTTTTGAAAGAGCACTGAAGCTTAAGCCGCAGGATTACTCTCTATGGAACAAGCTGGGTGCAACACAAGCAAACAGTGTTCAAAGTGCTGATGCAATAATGGCTTATCAACAGGCACTGGATTTAAAGCCTAATTATGTTCGGGCTTGGGCAAATATGGGTATCAGTTATGCAAACCAGGGTATGTATGACGAGTCCATTCGTTATTATGTTCGGGCACTTGCCATGAATCCAAAAGCAGAGAATGCATGGCAATATTTGAGAATTTCATTGAGCTGTGCTTCTAGGAATGACATGTTGGAGGCTTGTGATAGTCGTAATTTGGATCTTCTCCAGAAGGAGTTTCCACTACAGTAA 2211 0.4545 MAMRDLVSGAAACGDSSSSSANPLASLANALVGSSSKTQERLKEIPTSTPTDPASQFYSTTLPPNHLPGSELDKPLLNANSQASEFLHRFRGTTGLEETWDEIQREGAITQPRQPLPGIQQPPLDGTPQRVLSSFLHSFLDSSRGGVPFHPAPLPMLGLSEGDKQCIRDRSSIMARHLFADKSEEFIDAQVNALLCSLDIDSSVRGKGPMPERFRELEDYWNESQGNLRLGPPAADGWISEFSQHREKYDNPDAWANSFEQQYGANGWVSEFEHSQLSSVDQMRGMNMSNFAAMEQTRMLANTLAQNGDPKFQNSKFLQFVSKMSRGELIIDDNQVKENALPASGDWATEYDQQYNHGHAWAGEFLNDKVYHGPDQWANEFTSEGRQHDAVDDQWVNEFSKLNVNDWADEFGQQLGEGALGDSTSDSWAQAYDEFLNEQVAAKQQLDSSRGVYVFSDLNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQTAALKYLYGWLRHHPKYGTLAPPEMADSLYYADVARLFNEAAELSPDDADVHIVLGVMYNLSREYEKAIASFERALKLKPQDYSLWNKLGATQANSVQSADAIMAYQQALDLKPNYVRAWANMGISYANQGMYDESIRYYVRALAMNPKAENAWQYLRISLSCASRNDMLEACDSRNLDLLQKEFPLQ 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00014 736 Gene3D Tetratricopeptide repeat domain 445 736 IPR011990 GO:0005515
Pumo11g00014 736 ProSiteProfiles TPR repeat region circular profile. 665 697 - -
Pumo11g00014 736 FunFam Peroxisome biogenesis protein 5 447 735 - -
Pumo11g00014 736 Pfam Tetratricopeptide repeat 583 630 - -
Pumo11g00014 736 Pfam Tetratricopeptide repeat 468 530 - -
Pumo11g00014 736 ProSiteProfiles TPR repeat profile. 498 531 IPR019734 GO:0005515
Pumo11g00014 736 ProSiteProfiles TPR repeat profile. 597 630 IPR019734 GO:0005515
Pumo11g00014 736 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 733 IPR024111 -
Pumo11g00014 736 ProSiteProfiles TPR repeat profile. 665 698 IPR019734 GO:0005515
Pumo11g00014 736 Pfam Tetratricopeptide repeat 666 697 IPR001440 GO:0005515
Pumo11g00014 736 ProSiteProfiles TPR repeat profile. 631 664 IPR019734 GO:0005515
Pumo11g00014 736 MobiDBLite consensus disorder prediction 12 66 - -
Pumo11g00014 736 ProSiteProfiles TPR repeat region circular profile. 597 630 - -
Pumo11g00014 736 MobiDBLite consensus disorder prediction 1 75 - -
Pumo11g00014 736 SUPERFAMILY TPR-like 449 735 IPR011990 GO:0005515
Pumo11g00014 736 SMART tpr_5 631 664 IPR019734 GO:0005515
Pumo11g00014 736 SMART tpr_5 665 698 IPR019734 GO:0005515
Pumo11g00014 736 SMART tpr_5 597 630 IPR019734 GO:0005515
Pumo11g00014 736 SMART tpr_5 498 531 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00014 610 728 Glycosyltransferase AT3G04240 31.933 9.14e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00014 K13342 - gmx:100527272 1422.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00014 11 1128962 1141915 Pumo11g00014 11 1128962 1141915 ECH