Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo111g00145 ATGTCATCAGGTTTTGAAACCTTAAATTTACATCCTCAACTTAAACGAGCTATTGATGCTTTAGGTTTTAAGGATATGACGCCTATTCAGCAAAAGGTTTTAAAATTCACTTTGGCGGGACACGATGCAATTGGTCGTGCGCAAACAGGGACTGGTAAAACAGCGGCATTTTTGGTGAGCGTGATTAACGACTTGCTGAATAACCCAATTCAAGAGCAGCGCTACCGCGGTGAACCTCGCGCCTTGATTTTAGCACCGACTCGAGAGCTTGCACTGCAAATTGAAAGCGATGCGAAAGAACTCACAAAATTCTCAGATTTACATGTCGTGACGCTTTTAGGCGGCGTTGACTTTGATAAACAAAAAGCACAACTCGATAAAAAACCTGTCGATATTATGGTGGCGACGCCAGGTCGTCTGATTGACTTTGTTGAGCAAAAAGAAGTTTGGCTCGACCAGATTGAGTTTTTAGTGATTGATGAAGCCGATCGCTTATTGGATATGGGCTTTATTCCTTCAGTCAAACGCATTGTTCGTTTCTCACCGCGTAAGGAACAGCGTCAGACTCTGATGTTCTCTGCAACGTTTAGTTACGATGTTTTAAACCTTGCGCAGCAGTGGTTGTTTGAACCTGTAACTGTTGAAATTGAGCCAGAGAAGAAGACCAATGCGGACGTTGAACAACGGGTGTACATGGTCGCAAAGTCTGATAAATATAAATTGCTACAAGACATTCTGCGTGATGAGCCCATTGAAAAAGTGATGATTTTCGCAAATCGTCGCGATCAAGTGCGTAAACTCTATGACAACTTAAAGCGTGATGGCTATAAAGTGGTGATGTTGTCAGGTGAAATCGCACAAGACAAACGTTTGAAAATGCTGAGATCAATTTAA 894 0.4239 MSSGFETLNLHPQLKRAIDALGFKDMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLVSVINDLLNNPIQEQRYRGEPRALILAPTRELALQIESDAKELTKFSDLHVVTLLGGVDFDKQKAQLDKKPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQRQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKSDKYKLLQDILRDEPIEKVMIFANRRDQVRKLYDNLKRDGYKVVMLSGEIAQDKRLKMLRSI 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo111g00145 297 Gene3D - 1 217 IPR027417 -
Pumo111g00145 297 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 34 214 IPR014001 -
Pumo111g00145 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 216 IPR027417 -
Pumo111g00145 297 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 295 - -
Pumo111g00145 297 SMART ultradead3 22 229 IPR014001 -
Pumo111g00145 297 Gene3D - 219 297 IPR027417 -
Pumo111g00145 297 CDD DEADc 14 215 - -
Pumo111g00145 297 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 3 31 IPR014014 GO:0003724
Pumo111g00145 297 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 158 166 IPR000629 -
Pumo111g00145 297 Pfam DEAD/DEAH box helicase 27 200 IPR011545 GO:0003676|GO:0005524
Pumo111g00145 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 295 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo111g00145 5 295 Eukaryotic Initiation Factors Gene Family AT3G13920 31.741 1.72e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo111g00145 K03732 - acb:A1S_2260 528.094