Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo111g00131 ATGCGTTGGGTCTTAGAAAAAACATTCAAAGAAGAAGGTTTTGATGTCACCAGCTTTGAAGAAGCACAATCCGCGCTCGATCAACTTAATTTAGATATGCCCGATGTGATTTTGACTGACATCCGCATGCCCGGTATTGATGGGCTCACTTTTTTAGGCAAAGTGAAAAGTAGCTATCCAGATTTACCTGTCATTATTATGACTGCACATTCAGATTTAGAATCTGCGGTATCCAGTTATCAAACAGGTGCTTTTGAATATCTACCTAAACCTTTTGACATTGATGAAGCATTGGCATTGGTCAATCGCGCCATCTTACACATCAATAAGTTACAACAACAAGAATCAGCAAAAACAGCAGCACCCATCCAATCCACTGAAATTATTGGTGAATCCCCTGCTATGCAGGAAGTATTTCGTGCGATTGGACGTCTTTCACAGTCCCACATTACCGTATTGATTAATGGTGAATCTGGAACAGGCGCAAATTCACAACGTCAAGGTCGTTTTGAACAAGCCAATGGCGGAACACTATTTTTAGATGAAATCGGCGATATGCCCTTTGAAACCCAAACACGCCTACTTCGGGTTTTAGCAGATGGGGAATTCTATCGCGTTGGCGGACATATTCCTGTCAAAGTGAATGTGCGCATTGTTGCTGCAACGCATCAAGATTTGGAAAAACGAGTGGATGATGGTCGCTTCCGTGAAGATTTATATCATCGCCTAAATGTCATCCGCATTCATATTCCAAAACTTGCTCATCGTAGTGAAGACATTCCAATGTTGGCGCAGCATTTCTTGGCACGTGCAGGTAAAGAGCTAGGTGTCAATCCTAAAATCTTACGTGCTGAAACCCAAGAATATATGAAACAACTACCTTGGCAAGGCAATGTCCGACAGCTAGAAAATACTTGTCGGTGGCTTACTGTGATGATTACAGGGCGTGAAGTTTACCCAGAAGATCTGCCTGCGGAATTAAAACAAATTCCAATTTTACGCTCGGGTGATGACGCTCAAGTACACCATACACATGAACGTGTTTCAGTACAGCATTGGGATGAATTATTATCACAATGGGCAATACAAAAACTGAAAAATGGTGAAATGAAGATCCTTGACATTGCCACCCCAATGTTTGAACGCACACTGATTACTGCAGCGTTACAGCAGACACGAGGTCGAAAACGCCACGCTGCTGAGTTACTGGGTTGGGGGCGCAACACCTTAACTCGCAAGCTAAAAGAGTTAGGCATGGACACAGCAGATGATGACATTGAAGAAGAAGTTATAGAAAACTAA 1302 0.4263 MRWVLEKTFKEEGFDVTSFEEAQSALDQLNLDMPDVILTDIRMPGIDGLTFLGKVKSSYPDLPVIIMTAHSDLESAVSSYQTGAFEYLPKPFDIDEALALVNRAILHINKLQQQESAKTAAPIQSTEIIGESPAMQEVFRAIGRLSQSHITVLINGESGTGANSQRQGRFEQANGGTLFLDEIGDMPFETQTRLLRVLADGEFYRVGGHIPVKVNVRIVAATHQDLEKRVDDGRFREDLYHRLNVIRIHIPKLAHRSEDIPMLAQHFLARAGKELGVNPKILRAETQEYMKQLPWQGNVRQLENTCRWLTVMITGREVYPEDLPAELKQIPILRSGDDAQVHHTHERVSVQHWDELLSQWAIQKLKNGEMKILDIATPMFERTLITAALQQTRGRKRHAAELLGWGRNTLTRKLKELGMDTADDDIEEEVIEN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo111g00131 433 Pfam Bacterial regulatory protein, Fis family 379 417 IPR002197 GO:0043565
Pumo111g00131 433 Pfam Sigma-54 interaction domain 160 249 IPR002078 GO:0005524|GO:0006355|GO:0008134
Pumo111g00131 433 SUPERFAMILY Homeodomain-like 341 420 IPR009057 -
Pumo111g00131 433 FunFam DNA-binding transcriptional regulator NtrC 253 325 - -
Pumo111g00131 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 325 IPR027417 -
Pumo111g00131 433 Gene3D - 255 325 - -
Pumo111g00131 433 ProSiteProfiles Sigma-54 interaction domain profile. 160 311 IPR002078 GO:0005524|GO:0006355|GO:0008134
Pumo111g00131 433 Pfam Response regulator receiver domain 2 101 IPR001789 GO:0000160
Pumo111g00131 433 Gene3D - 163 253 IPR027417 -
Pumo111g00131 433 CDD AAA 153 252 - -
Pumo111g00131 433 Gene3D - 1 127 - -
Pumo111g00131 433 FunFam DNA-binding transcriptional regulator NtrC 339 420 - -
Pumo111g00131 433 PRINTS FIS bacterial regulatory protein HTH signature 400 420 IPR002197 GO:0043565
Pumo111g00131 433 PRINTS FIS bacterial regulatory protein HTH signature 383 400 IPR002197 GO:0043565
Pumo111g00131 433 Gene3D - 326 420 - -
Pumo111g00131 433 PANTHER TRANSCRIPTIONAL REGULATORY PROTEIN 1 161 - -
Pumo111g00131 433 Coils Coil 94 114 - -
Pumo111g00131 433 SMART REC_2 1 101 IPR001789 GO:0000160
Pumo111g00131 433 SUPERFAMILY CheY-like 1 162 IPR011006 -
Pumo111g00131 433 Gene3D - 128 162 IPR027417 -
Pumo111g00131 433 ProSiteProfiles Response regulatory domain profile. 1 105 IPR001789 GO:0000160
Pumo111g00131 433 ProSitePatterns Sigma-54 interaction domain ATP-binding region B signature. 168 183 IPR025943 -
Pumo111g00131 433 FunFam DNA-binding transcriptional regulator NtrC 1 118 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo111g00131 4 96 Response Regulator Gene Family AT4G31920 35.789 7.80e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo111g00131 Response_reg 3.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo111g00131 K07712 - acb:A1S_1978 749.584