Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo111g00040 ATGACACCCATTCAGGAAAAGGTTTTGACATTCACTTTGGCTGGACATGATGCCATTGGACGGGCACAGACAGGTACGGGAAAAACCGCAGCTTTTCTTGTAAGTGTCATTAATGACTTGCTTAATAACCCTGTTAAACAGCAGCGTTTTCGTGGTGAAGCGCGTGCGTTAATTCTTGCACCAACACGCGAATTGGCTTTGCAGATTGAAAGTGATGCTAAAGATTTAACAAAATTCACAGATTTACATTTGGTGACTTTGTTAGGTGGTGTAGATTTTGACAAACAAAAGGCGCAGTTAGATAAGCAGTTTGTCGATATTATCGTAGCGACTCCAGGTCGTTTAATTGATTTTGTAGAGCAAAAAGAAGTTTGGCTAGATCAAATTGAATTTTTGGTGATTGATGAAGCAGACCGTTTGCTTGATATGGGTTTTATCCCATCAGTAAAAAGAATTGTGCGTTATTCGCCGCGTAAAGAGCAGCGTCAAACGCTCATGTTCTCTGCAACATTTAGTTATGATGTTCTAAACTTGGCGCAACAGTGGTTGTTTGAGCCAGTTACAGTAGAAATTGAGCCAGAAAAGAAAACCAATGCAGATGTTGAGCAACGTGTTTATATGGTTGCTAAAACTGATAAGTATAAATTGTTGCAAGAAATTTTACGTGATGAACCGATTGAAAAGGTTATGATTTTTGCCAATCGTCGTGATCAAGTGCGCAAACTTTATGATCATTTAAAGCGCGACGGTTATAAAGTCGTCATGTTATCTGGTGAAATTGCCCAAGATAAGCGCTTGAAAATGTTGGATCAGTTTAAGAATGGTCAACATAATATTATGATTGCAACTGATGTTGCGGGTCGTGGTATTCATGTAGATGGTGTTTCACATGTGATTAACTTTACTTTGCCTGAACAGTCTGATGATTATGTACACCGTATTGGGCGTACAGGTCGTGCGGGAAGTAGGGGGGTGAGTATTAGTTTCTTGTCTGAAGATGATGCGTTTTATCTTCCTGAAATTGAAAAGGCAATTGGTCAAAAATTACCTTTGACGCGCATTGAAGGTTACTGCTAA 1077 0.3946 MTPIQEKVLTFTLAGHDAIGRAQTGTGKTAAFLVSVINDLLNNPVKQQRFRGEARALILAPTRELALQIESDAKDLTKFTDLHLVTLLGGVDFDKQKAQLDKQFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKTDKYKLLQEILRDEPIEKVMIFANRRDQVRKLYDHLKRDGYKVVMLSGEIAQDKRLKMLDQFKNGQHNIMIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGSRGVSISFLSEDDAFYLPEIEKAIGQKLPLTRIEGYC 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo111g00040 358 SMART ultradead3 1 204 IPR014001 -
Pumo111g00040 358 SMART helicmild6 240 321 IPR001650 -
Pumo111g00040 358 Gene3D - 203 355 IPR027417 -
Pumo111g00040 358 Pfam DEAD/DEAH box helicase 2 175 IPR011545 GO:0003676|GO:0005524
Pumo111g00040 358 Pfam Helicase conserved C-terminal domain 212 321 IPR001650 -
Pumo111g00040 358 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 9 189 IPR014001 -
Pumo111g00040 358 CDD SF2_C_DEAD 201 330 - -
Pumo111g00040 358 Gene3D - 1 202 IPR027417 -
Pumo111g00040 358 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 133 141 IPR000629 -
Pumo111g00040 358 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 215 358 IPR001650 -
Pumo111g00040 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 340 IPR027417 -
Pumo111g00040 358 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 350 - -
Pumo111g00040 358 CDD DEADc 1 190 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo111g00040 2 343 Eukaryotic Initiation Factors Gene Family AT3G19760 31.195 2.87e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo111g00040 K03732 - acb:A1S_2260 650.203