Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo111g00003 ATGAACCAGAATATCCCGAATCGGCAGGATTTTAATCAATATATGGTGCCTGTTTTTGCACCTGCTCCATTTATTTTGGTACGTGGCGAAGGATCACGTTTGTGGGATCAACAAGAGAAAGAATATATTGATTTTGCAGGCGGAATTGCTGTAACGGCATTGGGTCATGCTCATCCTGTTGCGGTAAAAGCACTGGTCGAACAAGGCAGTAAGCTTTGGCACATTGGTAATGGTTATACCAATGAACCTGTATTACGTCTTGCTCAGAAATTGGTCGAAAATACATTTGCCGATAAAGTCTTTTTCTGTAATTCGGGTGCAGAAGCCAATGAAGCGGCTTTAAAACTTGCGCGTAAAGTGGGTTTGGTGACTGGGTCTGAACGTAAAAATAAAATTATTGCGTTTAAAAATGCCTTTCATGGTCGTACTTTATTTACGGTTACCGCAGGTGGTCAACCTAAATATTCACAAGATTTTGCGCCGTTACCACAAGGCATTGAGCATCTTCCATTTAATGATTTAGACGCCGTAAAAAATGCAATGGATGAGCATACTTGTGCCGTAATTGTTGAGCCGATTCAAGGTGAGGGCGGCATCATTACCGCAGATCCAGAATTTTTACGTGGTTTGCGTGAATTGTGTAATCAACATGGTGCATTGCTGATTTTTGATGAAGTACAAACAGGCGTAGGACGTACAGGTGCACTGTATGCGTATATGAATACAGGGGTTATTCCTGATGTATTAACAACTGCAAAAGCACTTGGTGGCGGCTTCCCTATTGGTGCAATGATTGCCACAGAGCAATATGCCAATATGTTTGTTGTGGGAGATCATGGCACGACCTATGGTGGTAATCCTTTGGCATGTGCTGTGGCTGAAGCGGTATTTAATGTTGTGAATACTCCTGAAGTTTTAGATGGTGTAAAACAGCGCTCGCAACAATTTATTGATGGCATTAATGCGATTAACGCAAAATATAATGTCTTTGAACAAGTACGTGGACAAGGTCTGTTACTGGGTTGTGTACTGAATGCAGCTTATGCAGGTAAAGCAAAAGACATCGTTACCCTTGCTGGAGAAGAAGGTTTACTGGCACTGGTTGCTGGTCCAAATGTTGTTCGTTTTACCCCATCGTTGATTATTCCAGAACGTGATATTCAAGAAGGTTTGCTGCGCTTTGAACAGCTTCGAGATCTTGATGATATCTACTGTTTGGCGGGTAAGTCTGGCGTTGGCTTGACTTCTTTGCCAGAGGATAGAAAAACGCTTCATGCTCGAATTACGCGAACTCAAAATACCCTTCAAGGGGAAATGCCGAAAAGTGAGCAAGGCTACCTTTTTGTGCTGGAAGATACAGTCGCCCAGAAGGTCGTTGGTGTGAGTGCAATTGAGGTTGCCGTTGGGCTGAAAGAGCCTTTCTATAACTATCATGTTGGACATCAAGTGCATGCGTCCCAAACACTTGATGTGTATAAAACATTAAAAACACTATTTTTGAGTAATGATCTTACAGGCTGTAGTGAACTGTGTACTTTATTTTTGGATGCAGATTACCGTAAAAACCAGAATGGTAAATTTTTATCGAAAGTCCGTTTCTTATTTATTGCTGCATTCAAAGCACATTTTGAGCAAAAATTAATTGCTGAAATGCGAGGCTATTCGGATGAATCGGGGAAATCACCGTTCTGGGATGCAATAGGGCAGTTCTTTTTTAGTATGGATTTTGCTACAGCCGATTATTTAAGTGGTATTGGGCAAAAGGTTTTTATTGCCGAACTTATGCCACGATTTCCAGTGTATATCGACTTGCTGCCTCAAGCTGCGCAAGAGGTGATTGGAAAAGTACATACACAAACTTTCCCAGCCTATCGTGTTCTAGAGTCAGAAGGGATGAAGTATCAAGGTTATGTCGATATTTTTGATGCAGGTCCAACACTAGAAGCCGAAGTTGAACATTTACGAGCAGTGCAAGAAAGCGAGCTTTTGACCATTAAAATTGTTGCAGAAGCGGAAACAGGTGACTGCGCTTACTTGGTTGCAAAAGATTCATACACGGACTATCGGGCACTGCTTATTTATAACCAAACCAATCAAAAAACATTGCCCCTCACGATTGAACAAGCAGAAATACTGGGCGTGGAAGATGGAAACCTTATTCGTCATGGCACCGAATGGATTAAATCTGATCCGATTCATCAACAAGCTATTTGGCAAGGCACAGAAGCAACGACTGAAGATGTCGCGCAGGCGTGTCAGGCAGCTAGAGTTGCATTCAAAAGTTGGGCAAGAACACCACTTTTAGAGCGTATTGCCATTATTGAACGCTTTGCCGCACTTTTAGAACAAAATAAGCAGCATTTAGCGTCCGTCATTAGTCAAGAAACCAGTAAACCGTTGTGGGAAACCTTGACTGAAGTCCAGTCGATGATTGCAAAAGTAGCGATATCTATCCGTGCGTATCATCAACGTACAGGTGAAAGTGAAACGCCTATGGCAGATGGGGTAGCATCATTGCGCCATCGTCCGCATGGGGTGTTGGCGGTATTTGGACCTTATAACTTCCCCGGTCATTTACCGAATGGTCATATTGTTCCTGCATTAATTGCTGGAAATACTGTGGTGTTTAAACCGAGTGAATTAACCCCTTGGACGGCTGAAGAAACAGTCAAGTTATGGCACGAAGCAGGTTTACCCAATGGTGTTTTAAATTTGGTTCAAGGCGGCAGATTAACAGGCGAAGCCTTAGCAAATTCTACTGAAATTGATGGTCTGCTTTTTACAGGCAGTGCAAACACAGGTTATCAACTGCATAAACAAGTTGCAGGATCGCCCGAAAAAATATTAGCCCTTGAAATGGGCGGAAATAATGCGCTGATTATTGATGAAATTGAAGATATTGATGCGGTGGTGAATTTAACGCTGCAATCGGCTTTTATTTCCGCAGGTCAACGCTGTACCTGTGCCCGCCGTTTAATCATTAAAAATGGTGCGGTAGGCGATGCTTTCATTCAACGACTGGTAGAAGCCAGCAAAAAGCTACTTATTGGTGAATGGAATGATCAACCACAGCCGTTTATGGGTGGGGTAATTTCACTGAAAGCCGCTGAAGCAATGCTAGATGCGCAAAAACGACTGCTTGATTTAGGCGCTCAACCTTTATTGAAAATGGAAAAATTGCGCGAGAACAGTTCGTTGTTATCGGCTGGGATATTAGATGTTACTGCGCTATCTGATGTGCCTGATGAAGAATATTTTGGTCCCTTAACCTGTATTAGCCGTTACGACCATTTTGATGAAGCAGTAGAGCTTGCCAATAAAACACGCTTTGGTTTGTCGGTGGGGCTTGTTTCACCTGATCGAGCGTTATTTGAAAAAATATTGATTGAAGCCCGAGCAGGCATTGTGAATTGGAATAAACCTTTGACAGGTGCATCAAGTGCCGCACCGTTTGGCGGTGTGGGTGCATCAGGAAATCATCGCGCAAGTGCATTTTATGCTGCCGATTATTGTGCATGGCCTATGGCTTCTTTAGAAAGTGAACAGGTTGCACGACCTGAAAAATTATCACCAGGCATTGTGCTGTAA 3588 0.4281 MNQNIPNRQDFNQYMVPVFAPAPFILVRGEGSRLWDQQEKEYIDFAGGIAVTALGHAHPVAVKALVEQGSKLWHIGNGYTNEPVLRLAQKLVENTFADKVFFCNSGAEANEAALKLARKVGLVTGSERKNKIIAFKNAFHGRTLFTVTAGGQPKYSQDFAPLPQGIEHLPFNDLDAVKNAMDEHTCAVIVEPIQGEGGIITADPEFLRGLRELCNQHGALLIFDEVQTGVGRTGALYAYMNTGVIPDVLTTAKALGGGFPIGAMIATEQYANMFVVGDHGTTYGGNPLACAVAEAVFNVVNTPEVLDGVKQRSQQFIDGINAINAKYNVFEQVRGQGLLLGCVLNAAYAGKAKDIVTLAGEEGLLALVAGPNVVRFTPSLIIPERDIQEGLLRFEQLRDLDDIYCLAGKSGVGLTSLPEDRKTLHARITRTQNTLQGEMPKSEQGYLFVLEDTVAQKVVGVSAIEVAVGLKEPFYNYHVGHQVHASQTLDVYKTLKTLFLSNDLTGCSELCTLFLDADYRKNQNGKFLSKVRFLFIAAFKAHFEQKLIAEMRGYSDESGKSPFWDAIGQFFFSMDFATADYLSGIGQKVFIAELMPRFPVYIDLLPQAAQEVIGKVHTQTFPAYRVLESEGMKYQGYVDIFDAGPTLEAEVEHLRAVQESELLTIKIVAEAETGDCAYLVAKDSYTDYRALLIYNQTNQKTLPLTIEQAEILGVEDGNLIRHGTEWIKSDPIHQQAIWQGTEATTEDVAQACQAARVAFKSWARTPLLERIAIIERFAALLEQNKQHLASVISQETSKPLWETLTEVQSMIAKVAISIRAYHQRTGESETPMADGVASLRHRPHGVLAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELTPWTAEETVKLWHEAGLPNGVLNLVQGGRLTGEALANSTEIDGLLFTGSANTGYQLHKQVAGSPEKILALEMGGNNALIIDEIEDIDAVVNLTLQSAFISAGQRCTCARRLIIKNGAVGDAFIQRLVEASKKLLIGEWNDQPQPFMGGVISLKAAEAMLDAQKRLLDLGAQPLLKMEKLRENSSLLSAGILDVTALSDVPDEEYFGPLTCISRYDHFDEAVELANKTRFGLSVGLVSPDRALFEKILIEARAGIVNWNKPLTGASSAAPFGGVGASGNHRASAFYAADYCAWPMASLESEQVARPEKLSPGIVL 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo111g00003 1195 Gene3D - 58 303 IPR015421 GO:0003824
Pumo111g00003 1195 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 392 722 IPR016181 -
Pumo111g00003 1195 SUPERFAMILY ALDH-like 725 1164 IPR016161 GO:0016491
Pumo111g00003 1195 NCBIfam arginine N-succinyltransferase 392 721 IPR017650 GO:0006527|GO:0008791
Pumo111g00003 1195 Gene3D - 662 719 - -
Pumo111g00003 1195 PANTHER AMINOTRANSFERASE CLASS III 9 395 - -
Pumo111g00003 1195 Hamap N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 710 1195 IPR017649 GO:0006527|GO:0043824
Pumo111g00003 1195 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 221 258 IPR005814 GO:0008483|GO:0030170
Pumo111g00003 1195 FunFam N-succinylglutamate 5-semialdehyde dehydrogenase 717 960 - -
Pumo111g00003 1195 FunFam N-succinylglutamate 5-semialdehyde dehydrogenase 956 1146 - -
Pumo111g00003 1195 FunFam Acetylornithine aminotransferase 58 304 - -
Pumo111g00003 1195 Pfam Arginine N-succinyltransferase beta subunit 392 721 IPR007041 GO:0006527|GO:0008791
Pumo111g00003 1195 Hamap Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 14 400 IPR004636 GO:0006525|GO:0008483
Pumo111g00003 1195 Pfam Aminotransferase class-III 23 396 IPR005814 GO:0008483|GO:0030170
Pumo111g00003 1195 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 951 958 IPR029510 GO:0016491
Pumo111g00003 1195 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 979 990 IPR016160 GO:0016491
Pumo111g00003 1195 NCBIfam acetylornithine/succinylornithine family transaminase 14 396 IPR004636 GO:0006525|GO:0008483
Pumo111g00003 1195 Gene3D Aspartate Aminotransferase, domain 1 28 391 IPR015422 GO:0003824
Pumo111g00003 1195 CDD OAT_like 19 396 IPR005814 GO:0008483|GO:0030170
Pumo111g00003 1195 SUPERFAMILY PLP-dependent transferases 8 396 IPR015424 -
Pumo111g00003 1195 NCBIfam arginine and ornithine succinyltransferase subunits 392 722 IPR007041 GO:0006527|GO:0008791
Pumo111g00003 1195 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 956 1146 IPR016163 GO:0016620
Pumo111g00003 1195 Pfam Aldehyde dehydrogenase family 729 1168 IPR015590 GO:0016491
Pumo111g00003 1195 NCBIfam acetylornithine/succinylornithine family transaminase 7 396 IPR017652 GO:0006520|GO:0008483|GO:0030170
Pumo111g00003 1195 CDD ALDH_SGSD_AstD 747 1178 IPR017649 GO:0006527|GO:0043824
Pumo111g00003 1195 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 728 1158 IPR016162 GO:0016491
Pumo111g00003 1195 NCBIfam succinylglutamate-semialdehyde dehydrogenase 722 1194 IPR017649 GO:0006527|GO:0043824
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo111g00003 716 1167 Aldehyde Dehydrogenase Gene Family AT3G48000 31.489 1.57e-53 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo111g00003 K06447 - acb:A1S_3130 759.599