Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02917 ATGGCTACAGAACCGGCCACATTGTTGATCAGCTGCGCCAAAGATACCTATGCTTGTTTTGTTGGTGAACTCTTTGCGTCTCTAAAAGATCGCGGATTCGTTGTGAAAATAGTCTCAGATGACCACCGGGAGCTTGGGAGAGAGGAAATTGAAAGGTTTAGAGTTTTTATTATTGTTTTATCCTGTCTTTATGCAACTTGTCCAATTCGCTTGGATAAGCTTGTTGATATCGTAAATGAGTTCAGTAGGAGAATAGAAAAAGAGAAGGAGGAGGAGGAGAGTAGGAGAAAAGAAGAAAAGGAAGAGGAGGAGGAGGTGGAGGAAGAGAAAGAAGAGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGAAGAGGAAGATGAGGAGGAGGAGGACATCGTAAATGATGTTGATGAGGAGGAGGAGGAGGACATCGTAAATGATGTTGATGAGGAGGAGGAGAAGTGCGTGAATAAACTTGCTGAGAGCGTAAACGAGAAGGAGGAGGAGGAGAAGCTACGCATTATTTTTCCAATTTTCGTGGACGTGGATCCGTCTCATGTAAAGTATCAGACAGATAGTTTTAAAATAACGTTCAATGTTAATCATACGAGGTCACAGAACTGGAGACAGGCTCTTAACGAAGTAGGTGGCCTTCTCGGCTGGCATTTCAAACGGTCTGGGGAAGTATATCGATGTGATGTTGTCAGGGATATCACTCAGGAGGTCTGTAAACTCATTCCTTGCTCAGTCGGACTACATCGTCGAGTGGAGGCAGTTAATGTTCTTTTGAATTCTGAATCTGACGAAGGAGTGCAGAGGGTTGGGATATATGGAAAAACTGGAACAGGCAAAACAACATTAGCACGTGGAGTTTATGACTCCAATTGTTCTGACAAATTTAACTCTAATTGCTTTCTTGAGAAGGTGGGAGAAAAGTTAAGTAAGCGTGGATTAGTATGGCTTATAAAGAAGCTTCTCTCTAAAATGGTTGATGACAATAATATCAACTTTGAAAATGCCAACGACGGAATGTCAATATTAGAGCAAAAAGTCAGACAGAAAAAGTGTTTTTTGGTTTTTGAAGACATTTCTTGTGAGCAGGTGTGTGACATTGTTAATGTAACGAGCTGCTTTAGTTCCAATAGCAAAGTCATCCTTACAGCTGACAAGAACTGTTTCCAACAATGCCCTCAGGTTCAAAGATATAAGGTAGAAAGTTTGACTTCGGAAGAGGCTTTGGAATTGCTTTGTTTGAAAGCTTTTAATTCTAAGAGAATGGATATTAAGCATTCTCGAGTTTTAGAACGAGCAGCAGCTATTGCTTCTGGGGCTCCCCTCTTTTTGGAACTGATAGGTTCCTTCTTTCATAAGAAAAGTAGAGAAACATGTATCTCTATAGTAGATCAATTAGATCAAAATGATAATGAATATGGAAATGAAACAATTGAAGATGGAAAGAAACGAAGGATAGTTCAAATGATCTTTCATGCTTTGGAGGAAGATCCCAAGGAGATGTTAATTCGCATTGCCTCTAACCTCAACAGAAAAAAATTGGCAAAGGTTGAAAAAACACTTCGTTCTCTTTTTGGTGTCTGTGTGACAAACTGTATTAAAGTGTTGCGTGATCAATCTCTTATAAAGATTAATGAGTGTGATCTGGTGATAATGCATGACTTCGTACAGAACTTGGTAAAAGATAAAGCCCAATTGAAATCTCAATTCATACAAAGTCAGTTACCATTGGCTGAAGAGATATGGGAATAA 1785 0.4034 MATEPATLLISCAKDTYACFVGELFASLKDRGFVVKIVSDDHRELGREEIERFRVFIIVLSCLYATCPIRLDKLVDIVNEFSRRIEKEKEEEESRRKEEKEEEEEVEEEKEEEVEVEVEVEVEVEVEVEEEEDEEEEDIVNDVDEEEEEDIVNDVDEEEEKCVNKLAESVNEKEEEEKLRIIFPIFVDVDPSHVKYQTDSFKITFNVNHTRSQNWRQALNEVGGLLGWHFKRSGEVYRCDVVRDITQEVCKLIPCSVGLHRRVEAVNVLLNSESDEGVQRVGIYGKTGTGKTTLARGVYDSNCSDKFNSNCFLEKVGEKLSKRGLVWLIKKLLSKMVDDNNINFENANDGMSILEQKVRQKKCFLVFEDISCEQVCDIVNVTSCFSSNSKVILTADKNCFQQCPQVQRYKVESLTSEEALELLCLKAFNSKRMDIKHSRVLERAAAIASGAPLFLELIGSFFHKKSRETCISIVDQLDQNDNEYGNETIEDGKKRRIVQMIFHALEEDPKEMLIRIASNLNRKKLAKVEKTLRSLFGVCVTNCIKVLRDQSLIKINECDLVIMHDFVQNLVKDKAQLKSQFIQSQLPLAEEIWE 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02917 594 SUPERFAMILY Toll/Interleukin receptor TIR domain 176 228 IPR035897 -
Pumo10g02917 594 SUPERFAMILY "Winged helix" DNA-binding domain 496 575 IPR036390 -
Pumo10g02917 594 Coils Coil 129 149 - -
Pumo10g02917 594 PRINTS Disease resistance protein signature 357 371 - -
Pumo10g02917 594 PRINTS Disease resistance protein signature 448 462 - -
Pumo10g02917 594 PRINTS Disease resistance protein signature 280 295 - -
Pumo10g02917 594 Gene3D - 3 159 IPR035897 -
Pumo10g02917 594 Gene3D - 249 409 IPR027417 -
Pumo10g02917 594 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 572 IPR044974 GO:0006952
Pumo10g02917 594 Pfam NB-ARC domain 262 491 IPR002182 GO:0043531
Pumo10g02917 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 514 IPR027417 -
Pumo10g02917 594 MobiDBLite consensus disorder prediction 88 112 - -
Pumo10g02917 594 Gene3D - 160 248 IPR035897 -
Pumo10g02917 594 MobiDBLite consensus disorder prediction 126 154 - -
Pumo10g02917 594 Coils Coil 71 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02917 Pumo-Chr10 58944778 58948431 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02917 257 474 WRKY Transcription Factor Family AT5G45050 26.818 4.64e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02917 - - gmx:102665383 294.278