Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02900 ATGGCAGTTTCAGGATCGTCTTACGATGTTTTCGTCAGCTTTAGAGGGTCCGATACTAGGCTCGGTTTTGTCGGGCATCTCTACAAAGCTCTGAATGAAAAGGGATTCCGTACCTTCGTTGACGACGACGACCTTACGAGAGGAGACGAAATCTCGCCTTCACTTCGCAAAGCAATTGAAGATTCCAGGATTGCCATTGTAGTCTTATCTCAGAACTATGCTTCTTCCAAGTGGTGTTTGGATGAACTTGCCCAGATCTTGGAGAACCGTCGATTGGTTCTGCCAGTTTTCTATTACGTTGATCCCTCCGATGTGAAACATCAGAAGGGGATCTATGAAGAAGCACTCGCTATGCATCAGAAATCCAACTCTGGCTCAAACAAAGTCATGAAATGGAGGAACGCACTGCATCAAGCTGCTAACTTGTCCGGATTTCATTTCAGACATGGGAATGGATATGAATACGAGTTGATTGGGAAGATCGTTGATTTTGTCTCCAAAAATATTAATCGATCTGTTTCGGGTCACCCAGTTGGCCTCGAGTATCGAATGCTTGAACTAAACTGGCTTCTGGATGCCACATCTATTGGAGTCCATGTGATAGGGATTTGTGGGATGGGTGGCATAGGAAAAACCACACTTGCTCGCGCAGTCTATGATTCTGTTGCTGTCCAATTTGATGCTCCATGTTTCCTTCATGAGGTGAGAGAAACTGCTATCAAACGTGGCTTATTGCATCTCCAAGAGACTCTGCTTGCTGAGTTAGTCAGAGAGAAGGATATTCAATTGCCAAGTGTCGGTCTAGGAATTTCAATAATAAAGCAAAGGCTCCACAAGAAGAAGGTTCTTTTGGTTCTTGATGATGTGAGCAAGTCAGAGCATTTGAAGGCACTTGTTGGAAGGGCAGACTCGTTTGGTCCTGGAAGTAGAGTCATTGTTACAACTCAGGGACAAACAGTTGCTTAA 966 0.4451 MAVSGSSYDVFVSFRGSDTRLGFVGHLYKALNEKGFRTFVDDDDLTRGDEISPSLRKAIEDSRIAIVVLSQNYASSKWCLDELAQILENRRLVLPVFYYVDPSDVKHQKGIYEEALAMHQKSNSGSNKVMKWRNALHQAANLSGFHFRHGNGYEYELIGKIVDFVSKNINRSVSGHPVGLEYRMLELNWLLDATSIGVHVIGICGMGGIGKTTLARAVYDSVAVQFDAPCFLHEVRETAIKRGLLHLQETLLAELVREKDIQLPSVGLGISIIKQRLHKKKVLLVLDDVSKSEHLKALVGRADSFGPGSRVIVTTQGQTVA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02900 321 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 318 IPR044974 GO:0006952
Pumo10g02900 321 Gene3D - 173 321 IPR027417 -
Pumo10g02900 321 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 145 IPR035897 -
Pumo10g02900 321 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 171 - -
Pumo10g02900 321 Gene3D - 3 172 IPR035897 -
Pumo10g02900 321 PRINTS Disease resistance protein signature 276 290 - -
Pumo10g02900 321 PRINTS Disease resistance protein signature 200 215 - -
Pumo10g02900 321 SMART till_3 7 142 IPR000157 GO:0007165
Pumo10g02900 321 Pfam NB-ARC domain 188 321 IPR002182 GO:0043531
Pumo10g02900 321 Pfam TIR domain 8 167 IPR000157 GO:0007165
Pumo10g02900 321 ProSiteProfiles TIR domain profile. 6 169 IPR000157 GO:0007165
Pumo10g02900 321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 320 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02900 Pumo-Chr10 58141425 58142701 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02900 4 320 WRKY Transcription Factor Family AT4G12020 26.708 3.00e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02900 - - gmx:547614 387.882