Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02898 ATGACAACCCTCGGTCGCTTGGTCGAGCCAAAAGCCTTCAAAAATTATTATGTGTTGCTGAGTTGCGCCGAAGACACCCACGCCGGTTTTTCGGGCCACCTTTTCTATGCTCTCCGAGCGGTTGAATTCCGTACCATCTTAAACTGGGATTGTCAGAAGCTTGAGAGAAATGCATTTGAAGAATTCTTGATTTGCATTGTTGTCTTATCCGAGCGCTATCTTTCTTCTCCATCTCACTTGGATAAACTTGCCGAGATCGTTGTTGAGTTTACTCCGCGGAAGATGGGTCAACTGCTTCTGGCGGTTTTCTACGCTGTGGATCCCTCTCATCTGCGAGATCTGATAGGTAGTTATAGGAACAGTGTTGAGCCTGAAAGGTTCGAGACATGGACTCAGGCTCTGACTAGAGTGGCTGCCTTGACTGGCTTTCATTTCCAACGGGACGGGGATACATATGAATACCAGTGTATTGAGAAGATTGTTCAACAGGTCTCTAAACACGTTGCGTCCACAATTGGACTAAATCCTGAGGTGAAGGAAGTAGTCCAGCTTTTGTCTTCCGGATCTGATGATGGGATCCACGTGGTTGGGATATGTGAAGATCCTATAATAGGTAAGAAAACAATAGCTCGTAGAGTTTATGACTTAATTGCTGCTGGCGAAGGATTTGATAACTATTGCATTCTTAACGTGGGAGAAAATTTGAGGGAACCTGGATTAGTACATCTCCTGGACATGTTTTACTCTGGAATGGTTGGCAACAACCGTGGAATGACACTAACAAAGAGTACACTCAGCCAAAAGAAGGTTTTCATAGTTTTTGAAGGCATTAACTATGTGAATCTGTTGAAAGTTGTTGTTGAGCTAACTCATTGGTTTGGTTCTGGGAGCAGAGTAATCATTACGTCTCGAGATAAATGTTTGCTTGAAAATAACGGAGTTAAAAGAGTATATCAAGTAGCTAGGTCAGGTAGAACAACAGTAAGATATGAGAACGTTATAGACTGTGCTGAAACTTGTGCTTCTGTCGATCTATTGGCTTTGGAAGTAATTGATTACAATTCGCCTGAAAAATCAATAGAGGAATGCAAATCTGCTTTAGATCAATGTGAAAGAATTCCAAATTCAGACTTGATGACGCAGAACATGGTTAGAGAAAAGAATTGGATACAATTGTCCGAGGATATTTTAGAAGAAAATAAGGAGTATGGCAGTGGCATGCCAGATGCCCAACCTGCCTCAGATGACAGAAGCAGGAATTGGGATCCGATGGAATTGGAATATCAACTCTGCTCTTCCTCCTCTTCTCTAGATGATTTGTGA 1323 0.4233 MTTLGRLVEPKAFKNYYVLLSCAEDTHAGFSGHLFYALRAVEFRTILNWDCQKLERNAFEEFLICIVVLSERYLSSPSHLDKLAEIVVEFTPRKMGQLLLAVFYAVDPSHLRDLIGSYRNSVEPERFETWTQALTRVAALTGFHFQRDGDTYEYQCIEKIVQQVSKHVASTIGLNPEVKEVVQLLSSGSDDGIHVVGICEDPIIGKKTIARRVYDLIAAGEGFDNYCILNVGENLREPGLVHLLDMFYSGMVGNNRGMTLTKSTLSQKKVFIVFEGINYVNLLKVVVELTHWFGSGSRVIITSRDKCLLENNGVKRVYQVARSGRTTVRYENVIDCAETCASVDLLALEVIDYNSPEKSIEECKSALDQCERIPNSDLMTQNMVREKNWIQLSEDILEENKEYGSGMPDAQPASDDRSRNWDPMELEYQLCSSSSSLDDL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02898 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 379 IPR027417 -
Pumo10g02898 440 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 400 IPR044974 GO:0006952
Pumo10g02898 440 Pfam TIR domain 58 171 IPR000157 GO:0007165
Pumo10g02898 440 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 142 IPR035897 -
Pumo10g02898 440 Gene3D - 11 170 IPR035897 -
Pumo10g02898 440 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02898 Pumo-Chr10 58064963 58073361 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02898 172 347 WRKY Transcription Factor Family AT5G45050 27.624 1.34e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02898 - - gmx:100781554 248.825