Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02887 ATGCCAGCTTCGTTGGACCGCCTGATTCATGAAAGATGGTCGTCTTATGATGTTTTCGTGAGCTTCAGAGGGTCCGATACGAGGCTCGGTTTTGTGGGGCATCTCTACAAAGCTCTGAATCAAAGGGGATTCCGTACGTTCGTTGACGACGATGAGCTTAGGAGAGGAGACAAAATCTCAGCCTCACTTGTCAAGGCAATTGAAGCATCCGTGATTTCTGTTGTAGTATTCTCTGAGAACTATGCTTCTTCGGAGTGGTGTTTGGATGAACTTGCCCAGATCTTGGAGAGCCGTCGATTGGTTCTGCCAGTTTTCTATTACGTTGATCCCTCCGATGTGAAACATCAGAAGGGGATCTATGGAGAAGCACTCGCTATGCTTCGCAAATCCAACACTGACTCAGACAAACTCATCAAATGGAGGAGCGCACTGCATCAAGCTGCTGACTTGCCCGGCTTTCATTTCAGACATGGTGACGGATATGAATACGAGTTGATTGGGAAGATCGTTGACTACGTCTCCAAGAAGATTAATCGACCTGCTGCTGCAGATCGCTCAGTTGGCCTTGAGTATCGAATGCTTGAACTAAACTGGCTTCTGGATGCCTCATCTGATGGAGCCCGTGTCATAGGGATTTGTGGAATGGGTGGCATAGGAAAAACCACACTTGCTCGTGCAGTCTATGATTCTGTTGCTGTCCAATTTGATGCGCCATGTTTCCTTCATGAGGTGAGAGAAACTGCTATCAAACATGGCTTGGTGCATCTTCAAGAGACCCTGCTTGCTGAATTAGTTGGAGGAGACAAGGATATTAAATTGCCAAGTGTCCGTCTAGGAATTTCAATAATTAAGCAGAGGCTCTGCAAGAAAAAGGTTTTGGTGGTTCTTGATGACGTGAATGAGCCAGCGCATTTGAATGCACTTGTTGGAAGGCCAGATTGGTTTGGTCCTGGCAGTAGAGTCATTGTTACAACCCGGGACAGACAGTTGCTTCAAACTCATGGGGTTGACAAAATATATGAGGTAGAAAAGTTATCCGATGGTGAAGCTCTTGAATTGCTTTGTTGGAAGGCTTTCAAAACTGACAAAGTTTATCCAAATTTCGTTGATATGCTAAACCGTGCAATAACTTATGCTTCTGGCATTCCTCTGGCTCTCGAAGTCATAGGTTCAAACTTGTTTGGAAGAACAGAAGAATGGGAATCTACTTTAGATTGGTATGAAAAAATCCCCAATAATAAAGATATACAAAACGTACTCAAAATGTCCTTTGAAGCTTTGGGTGAACACGAGAAGGAGGTTTTTCTTGACATCGCATGTTTCTTCAATGGATTTGAATTAGCAGAGATCGAACATATACTCAGTGCTCATCATGGTGACAGTTTGAAACCCCACAATCCCATTCAAGCATTGGTTGAAAAATCTCTTATAAAAATTGATGAGCATGCCCATGTGAAGATACATGATTTGATACAAGAAATGGGTAGAGAAATTGTCCAACAGGAATCACGGGAACACCCTGGTAAACGCAGTAGGTTATGGTCTACTAATGATATAGTTCGTGTTTTAGAAGAAAATACGGGAACCTGTAATATTCAAAGTTTAATTCTGGATTTCTCCAAACCTGAAGAAGTGATACAATGGGACGGAATGGCCTTTATGGAGATGACAAGCCTCAGAACACTTATTATTAGAAAGGAGTGTTTTTCTGAAGGTCCGAAAAAACTTCCAAATAGCTTAAGAGTGCTGGAATGGTGGGGATATCCTTCGAAGTCTTTACCATCTAATTTTCGGCCAGAGAAACTAGCTGTGTTGAAGTTGCCTTCTAGTTGCTTTATGTCACTCGAGTTGCTAAACTTTTCTCATATGAGAGTTTTGAATTTTGACAAGTGTGAAGTTATGACACAGATACCTGATTTATCTGGTGCCCCAAATTTGAAAGAATTATCTTTTGCCTTTTGTGAGAATTTAGTTGAAATTCATGAATCGGTTGGATTCCTAGATAAACTTAAAATCTTGAACTTTGAGGGTTGCCACAAGCTTGGGACTTTTCCACCAATTGAGTTGACCTCTCTTGAAAGCATCAAACTGTCATATTGTTCAAGTCTTGTGAATTTTCCCAAAATATTGGGAAAAATGGAAAACATAACACTTCTTTCTTTGGAGTACACTGCCATAAGTAAATTGCCACATTCAATTAGAAGACTTGTCCGACTTCAAAGATTAGAACTGCACAACTGTGGAATCGTTCAGTTACCTAGTAGCATTGCCACATTGCCAGATCTTGAGGTGTTGAGTATTTGGCAATGTGAAGGGTTGCAACCATTGAAACAGGACAAAGATGTAGAGACCGAGAGTTTAATGGTGTCGTCTTCGAATGTAGAACATATTGATTTCTGTTCCTGCAATATATCAGATGAATTCATTGAAATAGGGCTCGATTGGTTTGCCAATGTGAAAGAGTTAAACCTTTCAACAAATAATTTCACAATTCTTCCTGAATGCATCAAAGAATGTCATCTTTTGAGGAAACTTAATTTGGATTACTGCATGCATCTTCGAGAAATTGGAGGGGTTCCACCCAATTTAGAGATATTATCTGCAATACGGTGCACATCCTTGAATGATTTGGACCTCACAGTTCTTCCTGCATCCACCAAAGAATGTTGCTTTTTGAGAGAACTTATTTTGGATGATTGTGAGAATCTTCAAGAAGTAAGAGGGATTCCACCAAACATAGAATTTTTGTCTGCTACAAACTGCAGATCCTTGAGTGCCTCGTGTAGAAGAATGTTATTGAGACAGGAGGTTCATGAAGCTGGAAATAAGAGATTTTGTTTGCCAGAAAAAAGGATTCCAGAATGGTTTGAGCACTGTAGCAGGGGACAGTCAATTTCTTTTTGGTTTCGTGACAAGTTCCCAGTGGTATCTCTCTGTCTTGCTGGACTCGTGCATAAGTACCCTATTGGATTTAAACCAATTGTGTCTATCAATGGCAATAAAATGAAGACAGGGTTCCAGACTAAATTGTTTAATGTCCCAGTATTAACTGATCATATACTTACTTTTGGTTTTAGACAAATTAAATTTGAAGATAATGTGGATGAAGTACTTTCAGAAAATGAATGGAATCATGTGGTGGTCTCTATTGATATTGATTTCAAATGGAACCCAACAGAACCATTTGTTGTACGAACTGGACTCCATGTAATCAAACCAAAAAGTAGCATGGACGATATTCGATTCACTGATCCTTATAACCAACCATCTTTTAAAGAAAAACATATTGGCGGACATGGAAGTTTCTCAAAGACCATTTGTGCGGATGCAAAAAGAATTGGCACCATTAGATTAATTCCATTGCATTTAAAATGGGGTGGAGATTGGTTTTCATTGCTTCAACCTCTAGCCTTAAAAGATAATGTGAATTGGGTTTCAAATTTGATGGTATCATCTCAGATTAGTAGCGCTGCTGGTGTCAAAGGTTTGCAGGAACAACATTTACCTTCTATCATCCAAGAAAATTTCAAAGGCTGTGAAAGTGTAAATGAAGCTGAGCTGAGAATTGTAGAATGTAATAGCAATAGTGGTGAGGACAATGGCAGAAGTACAACAATAATGGAGAATCGGGTGAGAAGTGAGAAATGTGAACCTGCGTCAAATGATTTGGCCGCAGATTGGGATCCAATGGAATTAGAATATCAACTTTCATATTCAAAAGGCCAATTTGTTTCAAATGATGAAAGCGCCACAAGTGACAAGGGCCGTCATATGATGGGATCCGAATCTATTCAAACTGGCAAGTAA 3807 0.4003 MPASLDRLIHERWSSYDVFVSFRGSDTRLGFVGHLYKALNQRGFRTFVDDDELRRGDKISASLVKAIEASVISVVVFSENYASSEWCLDELAQILESRRLVLPVFYYVDPSDVKHQKGIYGEALAMLRKSNTDSDKLIKWRSALHQAADLPGFHFRHGDGYEYELIGKIVDYVSKKINRPAAADRSVGLEYRMLELNWLLDASSDGARVIGICGMGGIGKTTLARAVYDSVAVQFDAPCFLHEVRETAIKHGLVHLQETLLAELVGGDKDIKLPSVRLGISIIKQRLCKKKVLVVLDDVNEPAHLNALVGRPDWFGPGSRVIVTTRDRQLLQTHGVDKIYEVEKLSDGEALELLCWKAFKTDKVYPNFVDMLNRAITYASGIPLALEVIGSNLFGRTEEWESTLDWYEKIPNNKDIQNVLKMSFEALGEHEKEVFLDIACFFNGFELAEIEHILSAHHGDSLKPHNPIQALVEKSLIKIDEHAHVKIHDLIQEMGREIVQQESREHPGKRSRLWSTNDIVRVLEENTGTCNIQSLILDFSKPEEVIQWDGMAFMEMTSLRTLIIRKECFSEGPKKLPNSLRVLEWWGYPSKSLPSNFRPEKLAVLKLPSSCFMSLELLNFSHMRVLNFDKCEVMTQIPDLSGAPNLKELSFAFCENLVEIHESVGFLDKLKILNFEGCHKLGTFPPIELTSLESIKLSYCSSLVNFPKILGKMENITLLSLEYTAISKLPHSIRRLVRLQRLELHNCGIVQLPSSIATLPDLEVLSIWQCEGLQPLKQDKDVETESLMVSSSNVEHIDFCSCNISDEFIEIGLDWFANVKELNLSTNNFTILPECIKECHLLRKLNLDYCMHLREIGGVPPNLEILSAIRCTSLNDLDLTVLPASTKECCFLRELILDDCENLQEVRGIPPNIEFLSATNCRSLSASCRRMLLRQEVHEAGNKRFCLPEKRIPEWFEHCSRGQSISFWFRDKFPVVSLCLAGLVHKYPIGFKPIVSINGNKMKTGFQTKLFNVPVLTDHILTFGFRQIKFEDNVDEVLSENEWNHVVVSIDIDFKWNPTEPFVVRTGLHVIKPKSSMDDIRFTDPYNQPSFKEKHIGGHGSFSKTICADAKRIGTIRLIPLHLKWGGDWFSLLQPLALKDNVNWVSNLMVSSQISSAAGVKGLQEQHLPSIIQENFKGCESVNEAELRIVECNSNSGEDNGRSTTIMENRVRSEKCEPASNDLAADWDPMELEYQLSYSKGQFVSNDESATSDKGRHMMGSESIQTGK 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02887 1268 Gene3D - 178 338 IPR027417 -
Pumo10g02887 1268 PRINTS Disease resistance protein signature 687 703 - -
Pumo10g02887 1268 PRINTS Disease resistance protein signature 209 224 - -
Pumo10g02887 1268 PRINTS Disease resistance protein signature 379 393 - -
Pumo10g02887 1268 PRINTS Disease resistance protein signature 286 300 - -
Pumo10g02887 1268 Pfam TIR domain 16 176 IPR000157 GO:0007165
Pumo10g02887 1268 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 179 - -
Pumo10g02887 1268 SMART till_3 15 150 IPR000157 GO:0007165
Pumo10g02887 1268 Gene3D - 344 428 IPR042197 -
Pumo10g02887 1268 Gene3D Ribonuclease Inhibitor 705 940 IPR032675 -
Pumo10g02887 1268 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 153 IPR035897 -
Pumo10g02887 1268 SUPERFAMILY L domain-like 546 904 - -
Pumo10g02887 1268 ProSiteProfiles TIR domain profile. 14 177 IPR000157 GO:0007165
Pumo10g02887 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 438 IPR027417 -
Pumo10g02887 1268 Gene3D - 11 177 IPR035897 -
Pumo10g02887 1268 Gene3D Ribonuclease Inhibitor 459 704 IPR032675 -
Pumo10g02887 1268 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 802 IPR044974 GO:0006952
Pumo10g02887 1268 MobiDBLite consensus disorder prediction 1243 1268 - -
Pumo10g02887 1268 Pfam NB-ARC domain 197 406 IPR002182 GO:0043531
Pumo10g02887 1268 SUPERFAMILY "Winged helix" DNA-binding domain 415 524 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02887 Pumo-Chr10 57974580 58293434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02887 10 774 WRKY Transcription Factor Family AT4G12020 31.716 8.86e-88 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02887 - - gmx:100817027 1556.58