Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02883 ATGGTGATCAGAGCACTTGTTTTCTTTTCCCCTAAGGATAACAATATTTGGGATTTGTACCTGCAGAGGAAAAGGGCAGTGATGATATTGAGAAACCTGGGGGCATTTGAGCCTATTATTAAAGGAGCATGGGCGTTTTCTAAGGTGTTCTGTTTTGTACATGTTGCCAATACCTATCTGATCGCCACCGCTGTGACCTATGGTCCTAGCATGCTTCCTACAATCGATTTGAAAACAAGTGTGTTCTTAATGGAAAAGATCTCAAAGCGGTTTGGTAGAGTTGCTCGTGGAGATATTGTAGTCTTGCGCAATCCTCAAGACCCTAGGCACTTCATGACCAAACGTGTGGTTGGATTGGAGGGTGATAGCGTTACATATATTTCCAATCCTGAGACCTATGAATTGGAGGGTGATAGTTTTACACACATTTCCTATCCTGAGAACAATGATAAGTCTAAGACGATTGTGGTTCCAAAGGGTGGCATTTGGGTAGAGGGAGATAACAAGTATAACAGCAATGATTCAAGAAAATTTGGTCCTGTTCCTTATGACCTTATTGACGGCAAGATGTTCTGGAGGATAACGCCACTTAAAGATTTTGGACCTTTCTGGAAAAAATGA 621 0.4171 MVIRALVFFSPKDNNIWDLYLQRKRAVMILRNLGAFEPIIKGAWAFSKVFCFVHVANTYLIATAVTYGPSMLPTIDLKTSVFLMEKISKRFGRVARGDIVVLRNPQDPRHFMTKRVVGLEGDSVTYISNPETYELEGDSFTHISYPENNDKSKTIVVPKGGIWVEGDNKYNSNDSRKFGPVPYDLIDGKMFWRITPLKDFGPFWKK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02883 206 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 42 203 - -
Pumo10g02883 206 ProSitePatterns Signal peptidases I signature 3. 162 175 IPR019758 GO:0004252|GO:0016020
Pumo10g02883 206 NCBIfam signal peptidase I 49 197 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02883 206 SUPERFAMILY LexA/Signal peptidase 58 203 IPR036286 -
Pumo10g02883 206 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 124 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02883 206 PRINTS Bacterial leader peptidase 1 (S26A) family signature 157 176 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02883 206 PRINTS Bacterial leader peptidase 1 (S26A) family signature 59 75 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02883 206 CDD S26_SPase_I 64 189 IPR019533 GO:0004252|GO:0006465
Pumo10g02883 206 Gene3D Umud Fragment, subunit A 56 205 - -
Pumo10g02883 206 Pfam Signal peptidase, peptidase S26 46 193 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02883 Pumo-Chr10 57842879 57845189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02883 71 203 MADS-box Gene Family AT1G29960 43.609 1.63e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02883 K09647 - gmx:100805997 326.25