LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g02860	ATGTGTTCGACGGCGAAGGCACTTTCAGAATCTAGGGATTTCTGGTACGATGTCTTTGTTAGCTTTAGAGGAGAAGACACTAGACACGGTTTTACGGGGAATCTCTATAATGCTTTGGAGAAAACGGGAATCCATACCTTCTTTGTCGACGAGTTGTTTAAGAGTGGAGAGGAAATCACAGCATCACTTGCGGAAGCGATCGAACGTTCCAGAATTTTCATTATAGTGTTCTCTGACAACTATGCTTCTTCTTCACGGTGCTTGGATGAACTTGTCCGTATCCTTGACTTCTCTGAGGATAACAGTCGGCCGGTTATTCCTGTTTTCTATTACGTTGATCCATCCGATGTGAGACATCAGAAGGGGATCTATGGAAAAGCACTAGCTAAGCATGAAAAAAGATTCAACTCTGAGTCATACAAAGTCATGAAATGGAGGAACGCACTGCGTCAAGCTGCTGCCTTGTCCGGTTGGCCTTTCAAACATGGGGATGGATATGAATACGAGTTGATTGAGAAGATCGTCGAGGACGTTTCCAAGAAGATTAAGATTAATCGACCTGTTGTGGATCGCTCAGTTGGCCTCAAGTATCGAATGCTTGAACTAAACTGGCTTCTGGATGCCACATCCCTTACTGGAGTCCATTTGATAGGGATTTGTGGCATGGGTGGCATTGGAAAAACGACACTTGCTCGTGCACTCTATCATTCTGCTGCTGTCCACTTTGATGCCTCGTGTTTCCTTGGTGAGGTGAGAGAAAATGTTATGGAACACGGCTTAGTGCATCTCCAGCAGACCCTGCTTGCTGAGATACTCCAAGAGAAGGATATTCATTTGACAAGTGTCAAGCAAGGAATGTCACTAATAAAGAAGAGGCTCGACAAGAAGAAGGTTCTTTTGGTTCTTGACGATGTCTGGGAGTTAGAGCAGTTGCGAGCTCTTGTTGGAAGTCCAGATTGGTTTGGTCCTGGCAGCAGAGTCATCATTACGACTCGGGACAGACAGTTGCTTAAAACTCATGGGGTTGAGAAAATATATGAGGTGGAAACTTTGGCCAATGGTGAAGCTCTCGAATTGCTTTGTTGGAAGGCTTTCAGAACTGACAGAGTTCATCCAGATTTCATTAATAAAATAAACCGTGCAATAAGTTATGCTTCTGGCGTTCCTTTGGCCCTTGAAGTTATAGGTTCAAACTTGTATGGAAGAGGAATAGAAGAATGGGAATCTACTTTAGATCGGTATGAAAATATTCCTCACAAAGACATACACACGATACTTAAAATGTCCTTCGATGCTTTGGATGGCCTTGAGAAGGAGGTTTTTCTAGACATTGCATGTTTCTTCAATGGATTTGAATTAGCAGAGATCGAGCATATACTTGGAGCTCATCATGGTTGCTCTTTGAAACCTCATATTGGAGCATTGGTTGAAAAATCTCTTATAAAGATTGACGAGCATAGCCGTGTCAAGATGCATGATTTGATACAACAAATGGGTAGAGAAATTGTTCGACAGGAATCACAAGACCACCCTGGTAAACGCAGTAGGTTATGGTCTACTGAGGATATAGTTCATGTTTTAGAAGATAACATGGGAACGTGTAAAATTCAAAGTATAATTCTGGACTTCTCCAAACCTGAAGAAGTGGTACAATGGGACGGAATGGCCTTCGTGAAGATGAAAAGCCTCAGGACACTTATTATCAGAAAGGAGTGTTTTTCTGAAGGTCCGAAAATACTTCCAAATAGCTTGAGAGTGCTGGAATGGTGGGGTTATCCTTCAAAGTCTTTACCATCCGATTTTCAGCCAGCGGAACTAGCTATATTGAAGTTACCCTATAGTTGCTTTATGTCACTTGAGGTGCCAAACTTTTTGCATATGAGAGTTTTGAATTTTGACTGGTGTGAATTTATAACACGGATACCTGATTTATCTGGATCCCCAATTTTAAAAGAATTATCTTTTGTTTTTTGTGAGAATTTAGTTGAAATTCATGAATCGGTTGGATTCCTAGATAAACTTGAAATCATGAACTTTGAGGGTTGTAGCAAGCTTGAGACTTTTCCACCAATCAAGTTGACCTCTCTTGAAAGCATCAACCTTTCGTATTGTTCAAGTCTTGTGAGCTTTCCTGAAATATTAGGAAAGATGGAAAACATAACGCATCTTTCTTTGGAGTATGCTGCCATAAGTAAATTGCCATGTTCAATTAGAAAACTTGTCCGACTTCAAAGTTTAGAACTGCGCAACTGTGGAATGGTTCAGTTACCAAGTAGCATTGTCACATTGCCAGAACTTGAGGTGTTGAGTATTTGCCAATGTGAAGGGTTGCAACCTTCAAAACAGGACAAAGATGTAGAAAATGAGAGCTTAATGTTGTCCTCTTCGAACTTGAAACATGTCGATTTATGGTCCTGCAATATATCTGACGAATTCATTGAAACAGGGCTCGCTTGGTTTGCCAACGTGAAAAAGTTAGACCTTTCAACAAATAATTTCACAATTCTTCCTTCATGCATCAAAGAATGTCGCCTTTTGAGGAAACTAAATTTGGACTACTGTACGCATCTTCAAGAACTTGACGGGATTCCACCCAATTTAGAAACATTATCTGCAATTCGGTGCACATCCTTGAAAGATTTAGACCTTGCAGTTCTTCTTGAATCCACCAGAGAAGGTTGCCTTTTGAGAGAACTTATTTTGGATGATTGTGAGAATCTTCAAGAAATTAGAGGGATTCCACCAAACATTGAATTTTTGTCTGCAACAAACTGCAGATCCTTGACTGCCTCATGTAGGAGAATGCTACTGAAACAGGAGTTGCATGAGGCTGGAAATAAGAGATTTTCTTTGCCAGGAACAAGGATTCCAGAATGGTTTGAGCACTGCAGCAGGGGACAGTCAATTTCCTTTTGGTTTCGTAACAAGTTCCCAGTGATATCTCTCTGTCTTGCTGGACTCATGCATAAGCACCCTTTTGGACTTAAACCTATTGTGTCCATTAATGGCAATAAAATGAAGACAGAGTTTCAAACTAGATGGTTTTATTTTGAGTTCCCAGTATTAACTGATCATATACTTACCTTTGGTGAAAGACAGATTAAATTTGAAGATAATGTGGATGAAGTACTTTCAGAGAATGGATGGAATCATGTAGTGGTCTCTGTTGATATTGATTTCAAATGGAACCCAACAGAACCACTTGCTGTGCGGACTGGACTCCATGTAATCAAATCAAAAAGTAGCATGGATGATATTCGATTCACTGATCCTTATAAACCAACCATCTTCTAA	3294	0.405	MCSTAKALSESRDFWYDVFVSFRGEDTRHGFTGNLYNALEKTGIHTFFVDELFKSGEEITASLAEAIERSRIFIIVFSDNYASSSRCLDELVRILDFSEDNSRPVIPVFYYVDPSDVRHQKGIYGKALAKHEKRFNSESYKVMKWRNALRQAAALSGWPFKHGDGYEYELIEKIVEDVSKKIKINRPVVDRSVGLKYRMLELNWLLDATSLTGVHLIGICGMGGIGKTTLARALYHSAAVHFDASCFLGEVRENVMEHGLVHLQQTLLAEILQEKDIHLTSVKQGMSLIKKRLDKKKVLLVLDDVWELEQLRALVGSPDWFGPGSRVIITTRDRQLLKTHGVEKIYEVETLANGEALELLCWKAFRTDRVHPDFINKINRAISYASGVPLALEVIGSNLYGRGIEEWESTLDRYENIPHKDIHTILKMSFDALDGLEKEVFLDIACFFNGFELAEIEHILGAHHGCSLKPHIGALVEKSLIKIDEHSRVKMHDLIQQMGREIVRQESQDHPGKRSRLWSTEDIVHVLEDNMGTCKIQSIILDFSKPEEVVQWDGMAFVKMKSLRTLIIRKECFSEGPKILPNSLRVLEWWGYPSKSLPSDFQPAELAILKLPYSCFMSLEVPNFLHMRVLNFDWCEFITRIPDLSGSPILKELSFVFCENLVEIHESVGFLDKLEIMNFEGCSKLETFPPIKLTSLESINLSYCSSLVSFPEILGKMENITHLSLEYAAISKLPCSIRKLVRLQSLELRNCGMVQLPSSIVTLPELEVLSICQCEGLQPSKQDKDVENESLMLSSSNLKHVDLWSCNISDEFIETGLAWFANVKKLDLSTNNFTILPSCIKECRLLRKLNLDYCTHLQELDGIPPNLETLSAIRCTSLKDLDLAVLLESTREGCLLRELILDDCENLQEIRGIPPNIEFLSATNCRSLTASCRRMLLKQELHEAGNKRFSLPGTRIPEWFEHCSRGQSISFWFRNKFPVISLCLAGLMHKHPFGLKPIVSINGNKMKTEFQTRWFYFEFPVLTDHILTFGERQIKFEDNVDEVLSENGWNHVVVSVDIDFKWNPTEPLAVRTGLHVIKSKSSMDDIRFTDPYKPTIF	1097

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g02860	1097	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	444	IPR027417	-
	Pumo10g02860	1097	FunFam	Disease resistance protein (TIR-NBS-LRR class)	12	184	-	-
	Pumo10g02860	1097	Gene3D	-	350	434	IPR042197	-
	Pumo10g02860	1097	Pfam	TIR domain	16	183	IPR000157	GO:0007165
	Pumo10g02860	1097	Pfam	NB-ARC domain	213	430	IPR002182	GO:0043531
	Pumo10g02860	1097	ProSiteProfiles	TIR domain profile.	14	182	IPR000157	GO:0007165
	Pumo10g02860	1097	PRINTS	Disease resistance protein signature	691	707	-	-
	Pumo10g02860	1097	PRINTS	Disease resistance protein signature	216	231	-	-
	Pumo10g02860	1097	PRINTS	Disease resistance protein signature	292	306	-	-
	Pumo10g02860	1097	PRINTS	Disease resistance protein signature	385	399	-	-
	Pumo10g02860	1097	Gene3D	Ribonuclease Inhibitor	527	707	IPR032675	-
	Pumo10g02860	1097	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	158	IPR035897	-
	Pumo10g02860	1097	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	16	774	IPR044974	GO:0006952
	Pumo10g02860	1097	SMART	till_3	15	155	IPR000157	GO:0007165
	Pumo10g02860	1097	Gene3D	Ribonuclease Inhibitor	708	987	IPR032675	-
	Pumo10g02860	1097	SUPERFAMILY	"Winged helix" DNA-binding domain	421	528	IPR036390	-
	Pumo10g02860	1097	SUPERFAMILY	L domain-like	557	880	-	-
	Pumo10g02860	1097	Gene3D	-	10	185	IPR035897	-
	Pumo10g02860	1097	Gene3D	-	186	347	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g02860	Pumo-Chr10	57346053	57350778	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g02860	8	778	WRKY Transcription Factor Family	AT4G12020	31.382	9.31e-92	322

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g02860	-		-	gmx:100817027	1864.74