Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02859 ATGCAAGCCTTTAGTCGCTTGGTTGAGCCCTTCAAATATCATATGTTCCTCAGCTTCAGAGGCAAAGATACACGCTTCACTTTTACCGGCAACCTCTACCGAGCTCTCGAGCATTTGGGATTCTGCGTCTTCATGGATGATCCAAAAATTGAAAAAGGGAAGAAAATCTCGGAAGAGCTTCCCAAGGCAATTAAGGAATCCCGGATTTTCATTATCGTTTTATCTGAGAATTTTGCTTCTTCCTCGTATTGCTTAGATGAAGTTGTTAAGATTCTTGTTGAGTTCGCTAAGGGGAAGGGTCGATTGGTTCTGCCGGTCTTCTTCTACGTCGATCCGTCTGATCTGGTTCGTACTTATGAACCAGCTTTGGCTTACCAGAAGAAGTGGTCTAATGATGAGAAAATTGAAGAATGGAGGACTGCTTTGACTGAATTATCTAAATTTCCTGGCTTCTGTATCAACAGGGACGGAAATATATTTGAATACCAACTTACTGACGAAATCGTTAAAGAGGTCTCTAGATATGTTACCTCCCCAATTGGACTTGATGAAAGAATATTTAAGGTTAACTTGCTTTTGTCCTCTGGATCAGATGGGGTCCGCATGATTGGGATATGTGGTGAAGCTGGGATTGGTAAAACAACGTTAGTCCATGAAGTTTTTAACTTCAACTCTTACCAGGGATTTGATCACTATCTCCTTTTTTATGACGTGGGAGAAATTTTGAGTCAGTCCGGAAATGTCGAAGAAATGTTGTCAATACTCAATGGAAAAAGGGTTTTTATAATTTTTGAAGATATTAAACATTCCGAGCAGTTGGAAAACATTAGAGAACTAACTAAGCAGCTTGGTTCTGGCAGCAAAGTTATCGTTACAGCTCAAGATAAGCATTTGCTTAATAGATGTGGGATTGGATTTGAAAGTATATATGAAATAAAAAGGTTTAGTGAGGCAGAAGCAGATCGATTGCTTAAACTGAAAGTTCTTAATTCTGCAACTGTTAGTCCTAGGTATGTGAACATTGTAAACAGAATTAAGACTTATGCCCGTGGTCATCCATGGACATTGGAAGTAATATGTTCCAACTTGAGTGGAAAATCGATAGAAGAATGTGAATCTGCATTACCCAAGTATGAATCAATTACAGATAGAGACATCCAAAAGATACTAGAAGTAATCTTTAATGCTTTGGAAAAATGTCAGCAGGAGATGTTGATTTACATTGCATTGTACCTCAAAGAACTGAAATTGATAGATGTTGAAGCTGAACTTCGTAATAAGTATAAAGTCTGCCCCAGAACAGATATTAGAGTGTTGCTTGATACATCTCTTATAAAAATTAATCAGCACGGCCAAGTGACATTGCATACCTCTACACAGGACATGATTAAAGATAAAGCTTCACGTTTTGAGCAGGAGATGTTGATTTACATTGCATTGTACCTCAAAGAACTGAAATTGATAGATGTTGAAGCTGAACTTCGTAATAAGTATAAAGTCTGCCCCAGAACAGATATTAGAGTGTTGCTTGATACATCTCTTATAAAAATTAATCAGCACGGCCAAGTGACATTGCATACCTCTACACAGGACATGATTAAAGATAAAGCTTCACGTTTTGAGGAGTATGGAAAGCTAGAAATGCAATGTGTCTCAAATGATGGAAGCATGGATTGGGATCTGATGGAATTGGATTGA 1698 0.3804 MQAFSRLVEPFKYHMFLSFRGKDTRFTFTGNLYRALEHLGFCVFMDDPKIEKGKKISEELPKAIKESRIFIIVLSENFASSSYCLDEVVKILVEFAKGKGRLVLPVFFYVDPSDLVRTYEPALAYQKKWSNDEKIEEWRTALTELSKFPGFCINRDGNIFEYQLTDEIVKEVSRYVTSPIGLDERIFKVNLLLSSGSDGVRMIGICGEAGIGKTTLVHEVFNFNSYQGFDHYLLFYDVGEILSQSGNVEEMLSILNGKRVFIIFEDIKHSEQLENIRELTKQLGSGSKVIVTAQDKHLLNRCGIGFESIYEIKRFSEAEADRLLKLKVLNSATVSPRYVNIVNRIKTYARGHPWTLEVICSNLSGKSIEECESALPKYESITDRDIQKILEVIFNALEKCQQEMLIYIALYLKELKLIDVEAELRNKYKVCPRTDIRVLLDTSLIKINQHGQVTLHTSTQDMIKDKASRFEQEMLIYIALYLKELKLIDVEAELRNKYKVCPRTDIRVLLDTSLIKINQHGQVTLHTSTQDMIKDKASRFEEYGKLEMQCVSNDGSMDWDLMELD 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02859 565 PRINTS Disease resistance protein signature 349 363 - -
Pumo10g02859 565 PRINTS Disease resistance protein signature 202 217 - -
Pumo10g02859 565 Pfam TIR domain 12 156 IPR000157 GO:0007165
Pumo10g02859 565 Gene3D - 10 171 IPR035897 -
Pumo10g02859 565 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 464 IPR044974 GO:0006952
Pumo10g02859 565 SMART till_3 12 148 IPR000157 GO:0007165
Pumo10g02859 565 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 150 IPR035897 -
Pumo10g02859 565 ProSiteProfiles TIR domain profile. 11 146 IPR000157 GO:0007165
Pumo10g02859 565 SUPERFAMILY "Winged helix" DNA-binding domain 385 456 IPR036390 -
Pumo10g02859 565 Gene3D - 172 248 IPR027417 -
Pumo10g02859 565 Pfam NB-ARC domain 247 373 IPR002182 GO:0043531
Pumo10g02859 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 408 IPR027417 -
Pumo10g02859 565 Gene3D - 249 305 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02859 Pumo-Chr10 57326401 57329039 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02859 63 490 WRKY Transcription Factor Family AT4G12020 23.656 2.17e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02859 - - gmx:106795499 759.214