Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02858 ATGTCGGAACCGGTGACACCTGTTGTGATGATCAGCTGCGCCAAAGATATACGCCCAGGTTTTGGTGGCAATCTCTTAAGATCTCTCCAAGTACGGGGATTCTCCGCGAAGTTAGTCGAAGATAACCACCAACAAGAGCAAATTCAAGGGTTCAAGATTTTCATTATAGTTTTGTCCAGTCACTATGCAACTTGTTCATCTCGCATGAATAAACTAACCGATATCGTAAATAAGAACGGTACGGCAAAAGATCGAGTCGTTTTTTCGGTTTTCTTCAAGGTGGAACCGTCTGATGTAAGGCATCAGAAAGGGGGTTTTGAAATAGCGTTGGATTCTCATAAGAATCATATGGTGGCGGAGGATTTACAGAGATGGATAAAGGCTCTGGAGGAAGTAGCAGACATTTCTGGCTGGACTTTCAATTGGTCCGGGAATACACATGAATACCTGGTTATTGAGAATATAGTTGAAAAGGTCTCTGACCATATTGCTTGCTCTGTTAGACTAAATGGTCGAGTGGAGAAAGTTAATGATCTTTTGAAGTCTGGATCTGACGATAGAAAGCTGGGGGTTTTGATATACGGAGAAGCTGGAATAGGAAAAACAACCATAGCTTGTGGAGTTTGTCGCTCCAATGGTGGAAAATTTGCCTACAATTGCTTTCTTGAAAAGGTGGGAGAAAATTTGAGGAATCATGGACCAGTAGGTCTCACAAGGATGCTTCTCTCTAAAATGATCGGTGACAATGATAGCAAGTTTGGAACTGAAGAAGAAATATTACGGAAAAAAGGCAAACAAAAGGGAAAGTCTCTTTTAGTTTTTGAAGACATTTTTGATCAAGAGCAGTTGGAATACATTGTTAAAGTAACAACTAACTACTTTAGTTCCGACTCCAAAGTCATCATTACAGCTGAGAAGAATTGTTTCCTACAATGCCCTGAGATTGAAATATATGAGGTAGAAAGGTTCGTGCAGGAAGAGGCTACTGATTTGTTTAATTTGAAAGCATTTAATTCTTGGCATCCAGAAATTACGCATTTGGCAATTATCCCTAAAGCAGTAACTATTGCTTCTGGGGTTCCATTCATTTTGGAACTGATAGGTGCCTACTGTCGTGGAAAAAGTGTAGAACAATGTTATATATTAGATCAATATAAAAACATTCCAAATGAGAAAAAGAAACAAATGATAGTTCAAATGAGCTATGATGATTTGAGCAAGGATAAGAAAAATATGTTATCTCACATTGCCTTTAACCTCAATGGACAAAAAAAGGCAACAGTTGAAGACCAACTTCATCCTCTTTTTGGTGACCGCACAAAAGATGGTATTAACGTGTTGCTTGATAAATCCCTTATAAAGATTAATGAGCAAGGTCTGGTGACAATGCACGACTTGACACTTAACATGGTAAAAGATATGGAGTATGGCAAACAAGAAGACCAACCTGCATCAAATTATGGAAGCATGTGTGATTTGATGGAATTGGACGAAAAAGAGTATGTCATGCAAGAAACCCAACCTGCCACAAATGATGGAAGCATAATTTATGAATCAATGGAATGTGAATATCAATGTTCATATCAGGACTGTTCTTCCTCCCCTTCTCAAGATCCTTCATGA 1623 0.3869 MSEPVTPVVMISCAKDIRPGFGGNLLRSLQVRGFSAKLVEDNHQQEQIQGFKIFIIVLSSHYATCSSRMNKLTDIVNKNGTAKDRVVFSVFFKVEPSDVRHQKGGFEIALDSHKNHMVAEDLQRWIKALEEVADISGWTFNWSGNTHEYLVIENIVEKVSDHIACSVRLNGRVEKVNDLLKSGSDDRKLGVLIYGEAGIGKTTIACGVCRSNGGKFAYNCFLEKVGENLRNHGPVGLTRMLLSKMIGDNDSKFGTEEEILRKKGKQKGKSLLVFEDIFDQEQLEYIVKVTTNYFSSDSKVIITAEKNCFLQCPEIEIYEVERFVQEEATDLFNLKAFNSWHPEITHLAIIPKAVTIASGVPFILELIGAYCRGKSVEQCYILDQYKNIPNEKKKQMIVQMSYDDLSKDKKNMLSHIAFNLNGQKKATVEDQLHPLFGDRTKDGINVLLDKSLIKINEQGLVTMHDLTLNMVKDMEYGKQEDQPASNYGSMCDLMELDEKEYVMQETQPATNDGSIIYESMECEYQCSYQDCSSSPSQDPS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02858 540 Gene3D - 9 158 IPR035897 -
Pumo10g02858 540 SUPERFAMILY Toll/Interleukin receptor TIR domain 45 138 IPR035897 -
Pumo10g02858 540 Pfam NB-ARC domain 172 394 IPR002182 GO:0043531
Pumo10g02858 540 Pfam TIR domain 45 178 IPR000157 GO:0007165
Pumo10g02858 540 PRINTS Disease resistance protein signature 264 278 - -
Pumo10g02858 540 PRINTS Disease resistance protein signature 357 371 - -
Pumo10g02858 540 PRINTS Disease resistance protein signature 190 205 - -
Pumo10g02858 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 415 IPR027417 -
Pumo10g02858 540 SUPERFAMILY "Winged helix" DNA-binding domain 395 475 IPR036390 -
Pumo10g02858 540 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 474 IPR044974 GO:0006952
Pumo10g02858 540 Gene3D - 159 316 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02858 Pumo-Chr10 57278353 57281058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02858 191 466 WRKY Transcription Factor Family AT5G45050 30.961 3.41e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02858 - - gsj:114373847 699.123