Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02857 ATGTGTTCGACGGCGAAGGCACTTTCAGAATCTAGGGATTTCTGGTACGATGTCTTTGTTAGCTTTAGAGGAGAAGACACTAGACACGGTTTTACGGGGAATCTCTATAATGCTTTGGAGAAAACGGGAATCCATACCTTCTTTGACGACGAGTTGTTTAAGAGTGGAGAGGAAATCACAGCATCACTTGCGGAAGCGATCGAACGTTCCAGAATTTTCATTATAGTGTTCTCTGACAACTATGCTTCTTCTTCATGGTGCTTGGATGAACTTGTCCATATCCTTGACTTCTCTGAGGATAACCGTCGACCGGTTATTCCAGTTTTCTATCACGTTGATCCATCCGATGTGAGACATCAGAAGGGGATCTATGGAGACGCACTGGCTAAGCATGAGAAAAGATTCAACTCAGAGTCATACAGAGTCATGAAATGGAGGAACGCACTGCGTCAAGCTGCTGCCTTGTCCGGTTGGCCTTTCAAACATGGGGATGGATATGAATACGAGTTGATTGAGAAGATCGTCGAGGACGTTTCCAAGAAGATTAAGATTAATCGACCTGTTGTGGATCGCTCAGTTGGCCTCAAGTATCGAATGCTTGAACTAAACTGGCTTCTGGATGCCACATCCCTTACTGGAGTCCATTTGATAGGGATTTGTGGCATGGGTGGCATTGGAAAAACGACACTTGCTCGTGCACTCTATGATTCTGCTGCTGTCCACTTTGATGCCTCGTGTTTCCTTGGTGAGGTGAGAGAAAATGTTATGGAACACGGCTTAGTGCATCTCCAGCAGACCCTGCTTGCTGAGATACTCCAAGAGAAGGATATTCATTTGACAAGTGTCAAGCAAGGAATGTCACTAATAAAGAAGAGGCTCGACAAGAAGAAGGTTCTTTTGGTTCTTGACGATGTCTGGGAGTTAGAGCAGTTGCGAGCTCTTGTTGGAAGTCCAGATTGGTTTGGTCCTGGCAGCAGAGTCATCATTACGACTCGGGACAGACAGTTGCTTAAAACTCACGGGGTTGAGAAAATATATGAGGTAGAAACTTTGGCCAATGGTGAAGCTCTCGAATTGCTTTGTTGGAAGGCTTTCAGAACTGACAGAGTTCATCCAGATTTCATTAATAAAATAAACCGTGCAATAACTTATGCTTCTGGCGTTCCTTTGGCCCTTGAAGTTATAGGTTCAAACTTGTATGGAAGAGGAATAGAAGAATGGGAATCTACTTTAGATCGGTATGAAAATATTCCTCACAAAGACATACACACGATACTTAAAATGTCCTTCGATGCTTTGGATGCCCTTGAGAAGGAGGTTTTTCTAGACATTGCATGTTTCTTCAATGGATTTGAATTAGCAGAGATCGAGCATATACTTGGAGCTCATCATGGTTGCTCTTTGAAACCTCATATTGGAGCATTGGTTGAAAAATCTCTTATAAAGATTGACGAGCATAGCCGTGTCAAGATGCATGATTTGATACAACAAATGGGTAGAGAAATTGTTCGACAGGAATCACAAGACCACCCTGGTAAACGCAGTAGGTTATGGTCTACTGAGGATATAGTTCATGTTTTAGAAGATAACACGATTGCTAGTGATGGAGGCAAGCAGTTGCTGGCATTAATTTCTCCTTTCGTTATGAATTACTTGGTCTGCGAGAACAACAGTTACCTTCTATTATCCAAGAAATCTTTGAAGGCTGTGGAAGTGTAA 1719 0.4282 MCSTAKALSESRDFWYDVFVSFRGEDTRHGFTGNLYNALEKTGIHTFFDDELFKSGEEITASLAEAIERSRIFIIVFSDNYASSSWCLDELVHILDFSEDNRRPVIPVFYHVDPSDVRHQKGIYGDALAKHEKRFNSESYRVMKWRNALRQAAALSGWPFKHGDGYEYELIEKIVEDVSKKIKINRPVVDRSVGLKYRMLELNWLLDATSLTGVHLIGICGMGGIGKTTLARALYDSAAVHFDASCFLGEVRENVMEHGLVHLQQTLLAEILQEKDIHLTSVKQGMSLIKKRLDKKKVLLVLDDVWELEQLRALVGSPDWFGPGSRVIITTRDRQLLKTHGVEKIYEVETLANGEALELLCWKAFRTDRVHPDFINKINRAITYASGVPLALEVIGSNLYGRGIEEWESTLDRYENIPHKDIHTILKMSFDALDALEKEVFLDIACFFNGFELAEIEHILGAHHGCSLKPHIGALVEKSLIKIDEHSRVKMHDLIQQMGREIVRQESQDHPGKRSRLWSTEDIVHVLEDNTIASDGGKQLLALISPFVMNYLVCENNSYLLLSKKSLKAVEV 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02857 572 PRINTS Disease resistance protein signature 216 231 - -
Pumo10g02857 572 PRINTS Disease resistance protein signature 292 306 - -
Pumo10g02857 572 PRINTS Disease resistance protein signature 385 399 - -
Pumo10g02857 572 Gene3D - 186 347 IPR027417 -
Pumo10g02857 572 SUPERFAMILY "Winged helix" DNA-binding domain 421 528 IPR036390 -
Pumo10g02857 572 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Pumo10g02857 572 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 528 IPR044974 GO:0006952
Pumo10g02857 572 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 158 IPR035897 -
Pumo10g02857 572 Gene3D - 10 185 IPR035897 -
Pumo10g02857 572 SMART till_3 15 155 IPR000157 GO:0007165
Pumo10g02857 572 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 184 - -
Pumo10g02857 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 444 IPR027417 -
Pumo10g02857 572 Pfam TIR domain 16 183 IPR000157 GO:0007165
Pumo10g02857 572 Pfam NB-ARC domain 213 433 IPR002182 GO:0043531
Pumo10g02857 572 Gene3D - 350 434 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02857 Pumo-Chr10 57241853 57253900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02857 193 529 WRKY Transcription Factor Family AT5G45050 36.765 6.93e-60 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02857 - - gmx:100816497 850.121