Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02851 ATGCATGCAGCAACAGGGACACGTATCAGTTCTTGCAAACTCTGTTGTCTGACACCATGTGATCCACCTACTCCACCGTTATCTCTGACCCACACTTCATCTGCTGCAAAACCCTTGTTATTCCTCCTTCTTCATACCATTGATCTACTGTTACACTTGAAGCGGAAAAGGGAAGTGATGATATTGAGAAACCTGGGGGCATTTGAGCCTATTATTAAAGGAGCATGGGCGTTTTCTAAGTTGTTCTGTTTTGTACATGTTACCAATACCTATCTGATCGCCACTGCTGTGACCTATGGTCCTAGCATGCTTCCTACAATCGATTTGAAAACAAGTGTGTTCTTAATGGAAAAGATCACAAAGCGGTTTGGTAAAGTTGCTCATGGAGATATTGTAGTCTTGCGCAATCCTCAAGACCCTAGGCACTTCATGACCAAACGTGTGGTTGGATTGGAGGGTGATAGCGTTACATACATTTCCAATCCTGAGACCTATGAATTGGAGGGTGATAGTTTTACACACATTTCCTATCCTGAGAACAATGATAAGTCTAAGACGATTGTGGTTCCAAAGGGTGGCGTTTGGGTAGAGGGAGATAACAAGTATAACAGCAATGATTCAAGAAAATTTGGTCCTGTTCCTTATGACCTTATTGACGGCAAGATGTTCTGGAGGATAAGCGGACAGAGGACTAAGGAGAAGGAGGACAAGAACGACACGTGGCACAGTGTCGAACGCAGCAGCGGCAGCTTCCTCCGCCGCTTCCGCCTGCCGGAGAATGCAAAGGTGAATGAGGTGAAGGCCGCTATGGAGAACGGAGTGCTCACTGTCACTGTTCCCAAGGAGGAAGTCAAGAAGCCCGATGTCAAGCCTGTTCAGATCACTGGCTAG 891 0.4613 MHAATGTRISSCKLCCLTPCDPPTPPLSLTHTSSAAKPLLFLLLHTIDLLLHLKRKREVMILRNLGAFEPIIKGAWAFSKLFCFVHVTNTYLIATAVTYGPSMLPTIDLKTSVFLMEKITKRFGKVAHGDIVVLRNPQDPRHFMTKRVVGLEGDSVTYISNPETYELEGDSFTHISYPENNDKSKTIVVPKGGVWVEGDNKYNSNDSRKFGPVPYDLIDGKMFWRISGQRTKEKEDKNDTWHSVERSSGSFLRRFRLPENAKVNEVKAAMENGVLTVTVPKEEVKKPDVKPVQITG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02851 296 Gene3D Umud Fragment, subunit A 88 246 - -
Pumo10g02851 296 ProSitePatterns Signal peptidases I signature 3. 194 207 IPR019758 GO:0004252|GO:0016020
Pumo10g02851 296 SUPERFAMILY LexA/Signal peptidase 90 226 IPR036286 -
Pumo10g02851 296 SUPERFAMILY HSP20-like chaperones 225 295 IPR008978 -
Pumo10g02851 296 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 75 228 - -
Pumo10g02851 296 Pfam Signal peptidase, peptidase S26 80 224 IPR019533 GO:0004252|GO:0006465
Pumo10g02851 296 PRINTS Bacterial leader peptidase 1 (S26A) family signature 189 208 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02851 296 PRINTS Bacterial leader peptidase 1 (S26A) family signature 91 107 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02851 296 PRINTS Bacterial leader peptidase 1 (S26A) family signature 144 156 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02851 296 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 150 296 IPR002068 -
Pumo10g02851 296 Pfam Hsp20/alpha crystallin family 226 295 IPR002068 -
Pumo10g02851 296 NCBIfam signal peptidase I 82 226 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02851 296 CDD S26_SPase_I 96 221 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02851 Pumo-Chr10 57082729 57097078 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02851 103 226 MADS-box Gene Family AT1G29960 42.742 2.39e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02851 K09647 - gmx:100805997 305.064