Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02845 ATGATATTGAGAAACCTGGGGGCATTTGAGCCTATTATTAAAGGAGCATGGGCGTTTTCTAAGGTGTTCTGTTTTGTACATGTTACCAATACCTATCTGATCGCCACTGCTGTGACCTATGGTCCTAGCATGCTTCCTACAATCGATTTGAAAACAAGTGTTTTCTTAATGGAAAAGATCTCAAAGCGGTTTGGTAAAGTTGCTCGTGGAGATATTGTAGTCTTGCGCAATCCTCAAGACCCTAGGCACTTCATGACCAAACGTGTGGTTGGATTGGAGGGTGATAGCGTTACATACATTTCCAATCCTGAGACCTATGAATTGGAGGGTGATAGTTTTACACACATTTCCTATCCTGAGAACAATGATAAGTCTAAGATGATTGTGGTTCCAAAGGGTGGCGTTTGGGTAGAGGGAGATAACAAGTATAACAGCAATGATTCAAGAAAATTTGGTCCTGTTCCTTATGACCTTATTGACGGCAAGATGTTCTGGAGGATAACGCCACTTAAAGATTTTGGACCTTTCTGGAAAAAATGA 540 0.4111 MILRNLGAFEPIIKGAWAFSKVFCFVHVTNTYLIATAVTYGPSMLPTIDLKTSVFLMEKISKRFGKVARGDIVVLRNPQDPRHFMTKRVVGLEGDSVTYISNPETYELEGDSFTHISYPENNDKSKMIVVPKGGVWVEGDNKYNSNDSRKFGPVPYDLIDGKMFWRITPLKDFGPFWKK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02845 179 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 16 176 - -
Pumo10g02845 179 Pfam Signal peptidase, peptidase S26 19 166 IPR019533 GO:0004252|GO:0006465
Pumo10g02845 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 85 97 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02845 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 32 48 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02845 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 130 149 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02845 179 CDD S26_SPase_I 37 162 IPR019533 GO:0004252|GO:0006465
Pumo10g02845 179 NCBIfam signal peptidase I 22 170 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo10g02845 179 ProSitePatterns Signal peptidases I signature 3. 135 148 IPR019758 GO:0004252|GO:0016020
Pumo10g02845 179 Gene3D Umud Fragment, subunit A 29 178 - -
Pumo10g02845 179 SUPERFAMILY LexA/Signal peptidase 31 176 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02845 Pumo-Chr10 56802712 56803684 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02845 44 176 MADS-box Gene Family AT1G29960 44.361 8.24e-36 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02845 K09647 - gmx:100805997 327.405