LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g02840	ATGGCTGCTTCAGTTGTAGTAGGGAACGCGACCACGAACACTAACACAAACACAAACACGGGTGTGGAGTGGCACGTGCGACCTCCAAACCCTAAGAACCCAATCGTCTTCTTCGATGTCACCATCGGTAACATTCCCGCCGGTCGAATCAAGATGGAACTCTTCGCCGATATTGCCCCCAAAACCGCCGAGAATTTCAGGCAGTTCTGCACTGGGGAATACAGGAAAGCAGGACTGCCTGTTGGTTACAAAGGATGTCAATTTCATAGAGTGATTAAGGATTTTATGATTCAGGCTGGTGATTTTTTGAAGGGTGATGGTAGTGGATGTGTTTCCATCTACGGACTCAAGTTTGATGATGAAAACTTTACTGCCAAACACACTGGCCCCGGCCTTCTGTCGATGGCAAATAGTGGACCAAATACCAATGGTTGTCAGTTCTTTATAACATGCGCAAAATGTGACTGGCTTGACAACAAGCATGTCGTTTTTGGGAGAGTTCTTGGAGATGGTCTTTTGGTTGTCAGGAAGATTGAGAATGTGGCAACTGGACCCAATAACCGGCCGAAATTAGCTTGCGTCATTGCTGAATGCGGTGAAATGTAA	606	0.4653	MAASVVVGNATTNTNTNTNTGVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFLKGDGSGCVSIYGLKFDDENFTAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM	201

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g02840	201	PIRSF	Peptidylpro_ismrse	7	201	IPR024936	GO:0003755
	Pumo10g02840	201	CDD	cyclophilin_ABH_like	34	199	-	-
	Pumo10g02840	201	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	83	100	IPR020892	GO:0003755\|GO:0006457
	Pumo10g02840	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	146	158	IPR002130	GO:0000413\|GO:0003755
	Pumo10g02840	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	88	100	IPR002130	GO:0000413\|GO:0003755
	Pumo10g02840	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	159	174	IPR002130	GO:0000413\|GO:0003755
	Pumo10g02840	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	131	146	IPR002130	GO:0000413\|GO:0003755
	Pumo10g02840	201	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	54	69	IPR002130	GO:0000413\|GO:0003755
	Pumo10g02840	201	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	36	201	-	-
	Pumo10g02840	201	FunFam	Peptidyl-prolyl cis-trans isomerase	23	201	-	-
	Pumo10g02840	201	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	38	199	IPR002130	GO:0000413\|GO:0003755
	Pumo10g02840	201	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	37	200	IPR002130	GO:0000413\|GO:0003755
	Pumo10g02840	201	SUPERFAMILY	Cyclophilin-like	24	201	IPR029000	-
	Pumo10g02840	201	Gene3D	-	23	201	IPR029000	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g02840	Pumo-Chr10	56640195	56647197	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g02840	30	198	U-box Gene Family	AT5G67530	42.690	2.57e-29	112

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g02840	K09567		-	gmx:100305521	389.423

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo10g02840	10	56640195	56647197	Pumo10g02840	10	56640195	56647197	ECH