Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02833 ATGAGTCCTCCAGCTGAATCCAACAACATGGAAGATAGCAAGCCTGAGAGTGGTGGGGACCAAGTCGAGTCTCGCTTCGTCGAGTTCTGCAAGAATGGGCTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAATAAATCTGTTTGGAGAAACCAAGCATATTCTACTGACAAATTTTTCGTCAATGGGGAATGGAACGTCTGAAGAAGCAGAGCGAAAAATGAGGGTGGGAAGGAAGAGACCTGAGAACACTGGGCTTAGCTTGTGTCGTATATTGAGAGCAGCTAAGCTTAACATTGCAGATTTTTTTAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACGGATTGGGAAAACAGGCTTGAGGCGAAGGAGATGCATGCCAATGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTCGTGGCAACTGACACAAATGCTGAAAAGAACTCATCTGTTACTGTTCATGCATCTGAATATCATCGATTTGGATGGTTGCTTTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTAGTGACTTGCACCAATGGTTTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGTTTTCGGAATTTCAACATCCATGACTCCTCACGCTTTGTTAAGAAAAGTAACAAAGGCGTGGACCTCCTTGCATCACTTTGCAACATATACAACACTTCTGAAGATGAGTTGAGGAAAACTATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGAAGCCTTGCTTGGCATCTGAATGTGAAACCGAAAACCTAGAGAATATCGATAAAGATGGTTTGACCTATTTTAAAGACTTGATGGAAGAATCGTCTCTACCTTCTAGTTTAAGTATGTTAGAAAAAGATTATGATTACATGATTCGCAACAAGAGTGAATTGGATGAGAGGTTATTCATTAATGAGGATGACAGCCTATTAGCTTCAGTAAGCTTGTCTGGAAGTTCTGTTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCAATGGCATCGCCTGCTAAGACCATTACAAGTCCACTCTCACCTCACCGCTCCCCCATATCGCATGCTAATGGCATCCCAGGTAGTGCAAACTCAAAGATGGCAGCGACCCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTGCATCGAGGCCCTCGCCAGAGCTGGAACGATTTTTGACATCATGTGATAGGGATGTTACAAGTGATGTGGTGCGCAGAGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTCGGAGAATGA 1377 0.419 MSPPAESNNMEDSKPESGGDQVESRFVEFCKNGLALEEKSCKEAINLFGETKHILLTNFSSMGNGTSEEAERKMRVGRKRPENTGLSLCRILRAAKLNIADFFKELPQFVVKAGPTLSNLYGTDWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVATDTNAEKNSSVTVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKSNKGVDLLASLCNIYNTSEDELRKTMEKANNVIADILKKKPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLSMLEKDYDYMIRNKSELDERLFINEDDSLLASVSLSGSSVSAGGVKRKFDSMASPAKTITSPLSPHRSPISHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLASRPSPELERFLTSCDRDVTSDVVRRAQIILQAIFPSSPLGE 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02833 458 FunFam Retinoblastoma-related protein 1 176 334 - -
Pumo10g02833 458 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 455 IPR028309 GO:0006357|GO:0051726
Pumo10g02833 458 Gene3D - 400 456 - -
Pumo10g02833 458 MobiDBLite consensus disorder prediction 1 15 - -
Pumo10g02833 458 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g02833 458 Gene3D - 176 334 - -
Pumo10g02833 458 SMART DUF3452_2 67 215 IPR024599 -
Pumo10g02833 458 Pfam Retinoblastoma-associated protein A domain 397 451 IPR002720 GO:0005634|GO:0051726
Pumo10g02833 458 Coils Coil 253 273 - -
Pumo10g02833 458 Pfam Domain of unknown function (DUF3452) 82 215 IPR024599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02833 Pumo-Chr10 56463255 56468451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02833 10 457 Core Cell Cycle Gene Families AT3G12280 60.934 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02833 K04681 - gmx:100777805 824.313