Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02820 ATGTGCCTATTCAAATCCTCTTCAAGCCACTTTAACTTGCTACTTGTGTCTCTGTTGATCAGCTTGGTAACCTTTGCGAGTGAAGCAGCTCCTATATACAGCAAACATGTCTGCACAGATGGATCATATTACCGACCCAACACAACATTCCAAACCAACTTGAACCTCCTCCTCTCATCCCTCGTCTCCAACGCCACCCTCCACGACGGCTTCTACCGCACCAACGTCTCCCTCGGAACCCCCGACGAGGTCAAGGGACTCTTCCTCTGCCGCGGCGACGTCACCCCCTCCGTCTGTCACGACTGCGTCACCGCCGCAGCAAAAAACATCACACAGCTCTGCACCAACCAGACAGAGTCCATAATCTGGTACGACGAGTGCACGCTGCGCTACTCCAACAGTTCCAACCTCGACAACATAGAACCAAGTGTTGACATGAAGAACGAACAGAGCGTCCCTGACTCGGACTACGCGCGGTTCAACGATATTCTTGCGCCCACCTTGAACGATGCGGCGCTGGAAGCTGTGAATTCTGCTTCGGGTAAGAAGTTTGCCACAAAAGAAGCGAATTTCACGAGCTCAATGAAGCTCTACACCCTGGCGCAGTGCACGCCCGATTTTTCCACTTCTTTATGTATCACGTGCTTCTCAAGCTCCATCGCTGCCTTTCCCAACTGCTGTGACGGCAAACGAGGTGCACGGGTCCTGCTTCCGGGTTGTAATGTCAGATATGAATTCTATCGCTTTTACAATGTTTCCACCGTGTCCCACCTTCCCTCCTCTCCCTCTTCAGGGAAAAGCAGTATCTCTATAATTGTGAGAATTGTTGTCCCAATTGTTGTTGCTATTGTACTTTTCATTGTTGGCGTCTACTTCCTACGTAAGAGGGCAAGCAAGAAGTATAATACTTTCGTCCAGGATTCAATTGTGGATGAGCTTACCGATTTGGAGTCCTTGCAATTTGACTTGGCTACAGTTGAAGCTGCCACAAACAGATTCTCAGATGAGAACAAGATTGGCCAAGGTGGATTTGGGGTGGTTTATAAGGGTATCTTCCCTAACGGACAAGAGATAGCTGTGAAGAGGTTGTCAGTAACCTCCTTGCAGGGTGCAGTAGAGTTCAGGAACGAAGCTGCTCTTGTGGCCAAGCTTCAACATAGAAATTTAGTGAGACTATTGGGATTTTGCTTGGAGGGACAGGAGAAGATCCTTATTCTATGA 1221 0.4898 MCLFKSSSSHFNLLLVSLLISLVTFASEAAPIYSKHVCTDGSYYRPNTTFQTNLNLLLSSLVSNATLHDGFYRTNVSLGTPDEVKGLFLCRGDVTPSVCHDCVTAAAKNITQLCTNQTESIIWYDECTLRYSNSSNLDNIEPSVDMKNEQSVPDSDYARFNDILAPTLNDAALEAVNSASGKKFATKEANFTSSMKLYTLAQCTPDFSTSLCITCFSSSIAAFPNCCDGKRGARVLLPGCNVRYEFYRFYNVSTVSHLPSSPSSGKSSISIIVRIVVPIVVAIVLFIVGVYFLRKRASKKYNTFVQDSIVDELTDLESLQFDLATVEAATNRFSDENKIGQGGFGVVYKGIFPNGQEIAVKRLSVTSLQGAVEFRNEAALVAKLQHRNLVRLLGFCLEGQEKILIL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02820 406 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Pumo10g02820 406 Gene3D - 143 249 IPR038408 -
Pumo10g02820 406 Gene3D - 7 135 IPR038408 -
Pumo10g02820 406 Gene3D Phosphorylase Kinase; domain 1 294 406 - -
Pumo10g02820 406 ProSiteProfiles Gnk2-homologous domain profile. 140 249 IPR002902 -
Pumo10g02820 406 Pfam Protein kinase domain 334 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02820 406 SUPERFAMILY Protein kinase-like (PK-like) 311 405 IPR011009 -
Pumo10g02820 406 ProSiteProfiles Protein kinase domain profile. 333 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02820 406 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 294 406 - -
Pumo10g02820 406 FunFam Cysteine-rich receptor-like protein kinase 10 142 249 - -
Pumo10g02820 406 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 136 - -
Pumo10g02820 406 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
Pumo10g02820 406 Pfam Salt stress response/antifungal 38 133 IPR002902 -
Pumo10g02820 406 Pfam Salt stress response/antifungal 158 246 IPR002902 -
Pumo10g02820 406 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 16 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02820 Pumo-Chr10 55772686 55774778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02820 4 405 Receptor kinase-like Gene Family AT4G05200 41.135 1.47e-104 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo10g02820 Stress-antifung 4.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02820 - - gmx:547727 581.252