Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02789 ATGCTTCACCAAAATAGCACTCAAAAGCTAATGGCGATGGAAACAAAAAATTTCATGACCCCTTTGAAGATTAGTCTTGGTTTCATGCTCCTCTTCCTCATCACCACAAGTGCACAACCTCCAATTTACTCGTACAATTCTTGCGTGAACTCAACTTCTATTAGCCCCTCATACAAAACCAACCTGAACACCCTCCTCTCATGGGTAATGAATGACTCATTCATAAGCACAGGATTTAACTACACCACTATAGGCGGCGACGGCGACGACGACAGTGATAGTGATAGTGGTGATGCTGTTTATGGGTTGTACAGCTGCAGATACGACATCACAGGATATTTCTGCCAGTTCTGTCTCAACTCTGCTAGCGAAATCGCTCGGCGGTGTCCCGACAGTGTAACCGCTATCATATGGTACGATGTGTGCATCCTCCGTTACTCTAACCAGAGTTTCCATGGCAAAGACTCAACAGAAACTAAGAAAATCGAGGATTCTATGGAGGGTTTGATTAGAAAAGCAACTATAGAGACCAAGAAGTTTTGGGCAGTGGAGGAGTTCGATTGGGGTGACAATGAGACATTGTATGGATGGGTGCAGTGTGATAGGGATCTTCCAAGTGATGAGTGCAGGCAGTGTTTGAATGCTTTGTTGGACATATTTCCAAAATGTTGTGGGACAAAGGTACAATGGGCTGTTTTTGCTCCAAGCTGTGGGATCAGGATGGATGATGAGAAGTTCTACCAGAAATCAGACGACAAAGGTACTAGTACATCAAGAAAGTTGATCATTTCCTTTAGTGTGCTGGGGTCAGTAGCTCTACTATGTTTCAGTGTCTACTGCTTCTGGTACAGGAGAAGAGTTAGAAAAGATGAGATGATGATCGATGAGGAAACATTGAATGGAGACCTACCTACAGTCCCATTAATGACAATTCTACACAGTACTAATAACTTTTCAAAAGCATCCAAACTAGGGGAAGGTGGATTTGGCTCTGTTTACATGGGAATTCTACCAGATGGAAGACAAATTGCAGTCAAAAGGCTCTCACAATTTTCTGGTCAAGGCTCAGAGGAGTTCAGGAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCGTGCTGCTTGCAGGAAAATGAGAAGATACTTGTATATGAGTATATGTCTAATTCAAGCCTCGACTCTCACTTGTTTGATGATGAAAAGAAAAGGAAACTTGACTGGAAACTAAGATTAAACATTATCAATGGAATAGCAAGAGGTATTTTATACCTTCATGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGATGATGAGATGAATCCCAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAATAGGACAGAGCCAGGCAAATACAAAACGAGTAATGGGCACTTATGGATACATGGCTCCGGAGTATGCTATGGAAGGATTATTTTCTGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTACTGGGAAAAAGAACAGTGGATTCCATCGATCAGAGCATGGTCAAAGTCTTCTTTTATATGCTTGGAACATATGGTGTGCAGGAAAATGTTTGGAATTGATGGATCCAGCACTGGTGAAATCCTTCATAGCCAGTGAAGTTGAGAAGTGCATACACATTTGTTTGTTGTGCGTTCAACAAGATGCAGCAGATAGACCTACCATGTCCACTGTTGTTCTAATGCTGGGAAGTGACACAATGGCCCTTCCAAAACCCAACCACCCTGCATTTTCAGTTGGAAGAATGACCCCAAATGAAGAGTCAACTTCAAGAAGTTCTAAGATACTTTCCATTAATGATGTTACAGTCTCTGCCATGTTACCAAGATCCTGTGTAGCAAATCAACAGCATTTTCTATTTTCAACAGATGCTGAGAAGGAGACTCTTGAGTGGTGA 1977 0.4133 MLHQNSTQKLMAMETKNFMTPLKISLGFMLLFLITTSAQPPIYSYNSCVNSTSISPSYKTNLNTLLSWVMNDSFISTGFNYTTIGGDGDDDSDSDSGDAVYGLYSCRYDITGYFCQFCLNSASEIARRCPDSVTAIIWYDVCILRYSNQSFHGKDSTETKKIEDSMEGLIRKATIETKKFWAVEEFDWGDNETLYGWVQCDRDLPSDECRQCLNALLDIFPKCCGTKVQWAVFAPSCGIRMDDEKFYQKSDDKGTSTSRKLIISFSVLGSVALLCFSVYCFWYRRRVRKDEMMIDEETLNGDLPTVPLMTILHSTNNFSKASKLGEGGFGSVYMGILPDGRQIAVKRLSQFSGQGSEEFRNEVMFIAKLQHRNLVRLLACCLQENEKILVYEYMSNSSLDSHLFDDEKKRKLDWKLRLNIINGIARGILYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGLARAFEIGQSQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIITGKKNSGFHRSEHGQSLLLYAWNIWCAGKCLELMDPALVKSFIASEVEKCIHICLLCVQQDAADRPTMSTVVLMLGSDTMALPKPNHPAFSVGRMTPNEESTSRSSKILSINDVTVSAMLPRSCVANQQHFLFSTDAEKETLEW 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02789 658 Pfam Protein tyrosine and serine/threonine kinase 321 587 IPR001245 GO:0004672|GO:0006468
Pumo10g02789 658 Pfam Salt stress response/antifungal 159 242 IPR002902 -
Pumo10g02789 658 Pfam Salt stress response/antifungal 53 149 IPR002902 -
Pumo10g02789 658 Gene3D Phosphorylase Kinase; domain 1 280 393 - -
Pumo10g02789 658 ProSiteProfiles Protein kinase domain profile. 318 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02789 658 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Pumo10g02789 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Pumo10g02789 658 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 59 632 - -
Pumo10g02789 658 SMART serkin_6 318 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02789 658 SUPERFAMILY Protein kinase-like (PK-like) 304 614 IPR011009 -
Pumo10g02789 658 Gene3D - 42 151 IPR038408 -
Pumo10g02789 658 Gene3D - 153 246 IPR038408 -
Pumo10g02789 658 Gene3D Transferase(Phosphotransferase) domain 1 394 597 - -
Pumo10g02789 658 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Pumo10g02789 658 CDD STKc_IRAK 324 589 - -
Pumo10g02789 658 FunFam cysteine-rich receptor-like protein kinase 10 394 596 - -
Pumo10g02789 658 Pfam Domain of unknown function (DUF3403) 591 636 IPR021820 GO:0004674
Pumo10g02789 658 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 283 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02789 Pumo-Chr10 54562740 54568087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02789 24 636 Receptor kinase-like Gene Family AT4G05200 41.630 7.91e-171 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo10g02789 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02789 - - gmx:100813108 1107.05