LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g02787	ATGGAGAGAGCACAACTCAGTGTGAGACCGATACCAATTACTTGTATTGCTTTTCTTCTATTGCTGAGCTTAAAACCATTTGTTGCAAAGGCACAAGCCAACAACTACCTTGGAGATGATTGCAACTACACCACCCCAAAACCTCTCAGCAGTGCATACCAAACCAACCTTAACAGCACCCTCTCATGGCTATCCTCAGATGCAGCCACAAGCAAAGGTTACAACCACAAAACCATAGGCAACAACAACAACAGTGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTGGTTGGATACTTTTGTCAATTCTGTGTCTCCACTGCTTCCAGACAAGTACTTCAGAACTGCCCCAATAGAGTCTCAGCTTTCATCTGGTATGATTTCTGCATCATAAGGTACTCTAATGAGACCTTCTTTGGGAATGTTACAACATACCCAACATGGCATGCTGTTGGAACCAAAAACATATCCAACATGGCAGAGATTCAGAAAAGTGAGGACTTTATGAGAAGTTTGATCAGAAAAGCAACTAATAATGAGACCAACCAGTTGTACTATATGGATGGCTTCAATTTGAGTTCCACTCAGAGGAGGTATGGCTTGGTGCAGTGCACCAGAGATCTCACCAAGGAAGAGTGCAGACAGTGTTTGGAGGCCATGTTAGCACAAGTTCCCAAATGTTGTGAACAAAAGCTAGGGTGGTTTGTTGGGGCTGCAAGTTGTATAGTAAAGTATGATGATTATATGTTCTACTCCAATAATCAATCATCTTCAGTTCCTGTGACAAATCTAACAGGTAAACAAGGGGGTGCTAGTAAGTCAAGAAACTTGATCATTGCATTAAGTGTGTTGGGGCTAATTGCTCTGCTGAGTTTGTGTGTCTACTACTTTTGGTGCAGGAATAGAGTTAGGAAAGATGGGCTAAAACCTCCTCTCTCTGCTTATGATCAAAATATTCAAATTGAGGAAACACTCAATACAGACTTACCTACAATCCCATTAATCACAATTCTAGAGAGTACTGATAACTTTTCACTAGCATCTAAATTAGGGGAAGGTGGATTTGGCCCCGTCTACAAGGGAATTCTACCAGATGGAAGACAAATTGCTGTCAAAAGGCTCTCAAAAGCTTCTAGTCAAGGCTCAGAGGAGTTTAAGAATGAAGTAACATTTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAGGAAAATGAAAAGATACTCGTATATGAGTATTTGTCTAATGCAAGTCTTAATTTTCACCTATTTGATAGTGAAAAAAGAAAGCAACTCGATTGGAAACTTATATTAAGCATTATCAATGGAATAGCAAGGGGTCTTTTATATCTTCACGAGGACTCTCGACTCAAGGTAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGACGATGAGATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAAAAGGCCAGAACCAAGCAAATACAAATCGAGTAATGGGCACTTATGGATACATGGCTCCAGAATATGCTATGGAAGGATTGTTTTCAATGAAATCTGATGTTTTCAGGTTTGGAGTTCTTGTTCTAGAAATCATTTGTGGAAGAAAGAACAGTGGATTTTTTCTATCAGAACATGGTCAAAGTCTTCTTTTATATACTTGGAGAATGTGGTGTGAAGGAAAATGTTTGGAATTAATGGATCCAGTGCTGGAAAATTCCTACATATCCAATGAAGTTATGAAGTGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGAAGCAGCAGATAGACCAACCATGTCCACTGTTGTTGTATTGTTGGCAAGTGACACAATGACCCTTCCAAAACCTAACAAACCTGCATTCTCAGTTGGAAGAATGTCCTCATCAGAGGAAGCATCTACTTTAGAAGGTTCCAAAAATGTTTCCATTAATGAGTTATCAATCTCTAAATATGAGGAGACTCCTAAGAGGTGGATTAAGGTAGAGGTGAGAATATGGGTTGGATTGTCCGGCCTGGACTTTAACGTCTTTGATAAAACGTAG	2073	0.398	MERAQLSVRPIPITCIAFLLLLSLKPFVAKAQANNYLGDDCNYTTPKPLSSAYQTNLNSTLSWLSSDAATSKGYNHKTIGNNNNSAVYGLYDCRGDVVGYFCQFCVSTASRQVLQNCPNRVSAFIWYDFCIIRYSNETFFGNVTTYPTWHAVGTKNISNMAEIQKSEDFMRSLIRKATNNETNQLYYMDGFNLSSTQRRYGLVQCTRDLTKEECRQCLEAMLAQVPKCCEQKLGWFVGAASCIVKYDDYMFYSNNQSSSVPVTNLTGKQGGASKSRNLIIALSVLGLIALLSLCVYYFWCRNRVRKDGLKPPLSAYDQNIQIEETLNTDLPTIPLITILESTDNFSLASKLGEGGFGPVYKGILPDGRQIAVKRLSKASSQGSEEFKNEVTFIAKLQHRNLVRLLACCLEENEKILVYEYLSNASLNFHLFDSEKRKQLDWKLILSIINGIARGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFEKGQNQANTNRVMGTYGYMAPEYAMEGLFSMKSDVFRFGVLVLEIICGRKNSGFFLSEHGQSLLLYTWRMWCEGKCLELMDPVLENSYISNEVMKCIQIGLLCVQEEAADRPTMSTVVVLLASDTMTLPKPNKPAFSVGRMSSSEEASTLEGSKNVSINELSISKYEETPKRWIKVEVRIWVGLSGLDFNVFDKT	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g02787	690	ProSiteProfiles	Gnk2-homologous domain profile.	34	139	IPR002902	-
	Pumo10g02787	690	ProSiteProfiles	Protein kinase domain profile.	345	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo10g02787	690	FunFam	Cysteine-rich receptor-like protein kinase 10	148	251	-	-
	Pumo10g02787	690	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	49	660	-	-
	Pumo10g02787	690	Pfam	Protein tyrosine and serine/threonine kinase	347	614	IPR001245	GO:0004672\|GO:0006468
	Pumo10g02787	690	Gene3D	-	33	139	IPR038408	-
	Pumo10g02787	690	Gene3D	-	147	251	IPR038408	-
	Pumo10g02787	690	Pfam	Salt stress response/antifungal	165	249	IPR002902	-
	Pumo10g02787	690	Pfam	Salt stress response/antifungal	48	136	IPR002902	-
	Pumo10g02787	690	FunFam	cysteine-rich receptor-like protein kinase 10	421	623	-	-
	Pumo10g02787	690	CDD	STKc_IRAK	351	613	-	-
	Pumo10g02787	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	466	478	IPR008271	GO:0004672\|GO:0006468
	Pumo10g02787	690	Gene3D	Transferase(Phosphotransferase) domain 1	421	625	-	-
	Pumo10g02787	690	FunFam	Cysteine-rich receptor-like protein kinase 28	37	138	-	-
	Pumo10g02787	690	ProSiteProfiles	Gnk2-homologous domain profile.	145	251	IPR002902	-
	Pumo10g02787	690	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	313	420	-	-
	Pumo10g02787	690	SMART	serkin_6	345	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo10g02787	690	Gene3D	Phosphorylase Kinase; domain 1	313	420	-	-
	Pumo10g02787	690	SUPERFAMILY	Protein kinase-like (PK-like)	325	616	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g02787	Pumo-Chr10	53892005	53897719	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g02787	13	641	Receptor kinase-like Gene Family	AT4G05200	42.284	1.94e-171	505

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pumo10g02787		PK_Tyr_Ser-Thr	1.6e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g02787	-		-	gmx:100792758	983.4