LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g02770	ATGGCTGGGGAAGCAACTTTTTCCCACGATGTGTTCCTGAGCTTCAGAGGTGAGGATACACGGAGGAGTTTTACTTCACATCTCTACGATGCTCTCTCTCAAAGGGGAATCAGTACCTTCTTTGATATGGAGCTTGAAAGAGGATACGAAATCTGGCAAGCAATTTCCAAGGCAGTTGAAGAATCCAGTGTTGCCATTATTTTGTTCTCTCAGAACTACGCTTCTTCCACGTGGTGTTTAGATGAACTCGCCCTCATCATTGACCGCTTTGAGGAGAAGAAGCTTAGGCATGTTTTACCTGTTTTTTATGGCGTCGATCCTTCGGATGTGCGACATCAGAGAGGGAGTTATGGAGAAGCATTGGCCAGGCATGAGGAGAGGTTCAAGGATGACATAGAGAAGCTCAACGTAGTGAGCAGGTGGATGAGGGCTCTGCATCACGCATCTGACCTCTCAGGCTTTGATTCCAGAACGTTTAGTTACGAACCAGAATTGATTGGGATGATCGTTAAAGAAGTCTCTAGAATGATTAATCATGGACTTCGCGTTCCTTTACATGTTGCTGATTACCCAGTTGGATTGGAGTCTCGAATGCTTAAAGTAACGTCGCTTCTGAATGTTGAGACTGATGATGGAGTCCGCATGGTAGGGATCCATGGTACTGGTGGAATTGGCAAAACTACAATTGCTCGGGCAGTATTTAATTCCATCAGTGACCAATTTGAATGCTCGTATTTTCTTGAAGATGTGAGAGTGAATTCAGCTAAACATGGCTTAGTGCATCTCCAAGAGATGGTTCTCTCTGCAATACTTGGAGACATGAATATTGACTTACGAAATGTGAATCAAGGAATTTTGGAAATAAAGGAAAGGCTGAGAAGGAAAAAGGTTCTTTTGGTTCTTGACGATGTTGACAAAATAGAGCAGCTGCAGGCTGTTGTAGGAGGACTTGGTTGGTTTGGTTCTGGCAGCAGGGTTATCATTACAACTCGGGAGGAGCGTTTGCTGGCATTGCATAGGGTTGAAAGCTCATATAGGGTGGAGGAACTAAGTGACAAAGAAGCTCTTGCTTTGCTTACTTGGAATGCTTTCAAAACTGACAAAGTTGATCCAAGTTACACAGACATGTTAAATCGTGCAGTGACTTATGCTTCTAGGCTTCCATTGGACTTGCAAGTAATGGGTTCCTACTTATTTGGAAAAAGTAGAGATGAATGGAATGAAGCATTAAACCACTTTGATTCCTTGGAGGAAGATGAGAAAGGCATTTTTCTTGACATTGCTTGTTTCTTCAATGGACAAAAATGGACAGATATTGAAGATATACTTTGTGCTCATCATGGTTTATCCACAAAAATTAGTATTGAGGCATTGGTTGCAAAATCTCTCATAAACATTGATGATGGTCTTGTGATATTACATGACTTGATACAAGACATGGGTAGAGAAATTGTTCAACAGGAATCACGATATGAGCCTGGGAAACGTAGTAGGTTATGGTCCTTTAAAGATGTAGTTCAAGTTCTAGAACAAAATGCGGGATCAAGTACAATTGAAAGAATATTTCTGGATTTCCCCAAAGATGATGGACCCAAAGGTGAAAGAGTGCATTGGGATGGAGAGGCCTTCAAGAAGATGAAAAACCTCAAAACACTTATTATTAGAAATGGTCATTTTAACAAAGGCCCCGCACATCTTCCTCCAAGTTTAAGAGTGCTGAAAGGGTGGGGATATCCATCACGATCTTTACCTGATGATTTTCATCCAAAGAAGCTTGCCATACTCGAATTACCAGAAAGTTGCTTAAGGATAAGTGCACCGATTCAGGCAAGTTTGTCCATGTGTCCTTGTATATTAAAAATTTTGGATTTTGGCTACTGTGAACAGATAACTTGTATACCTGATGTATCTGGCCTTCCAAATTTAGAAAAATTATCTTTTAAACACTGTGAGAATTTAAGTGAAATTCACCAGTCAGTTGGATTTCTAGATAAACTTAGAATCTTGGATGCTGTTTGTTGCAAGAAACTTAGGACTTTTCCACCCATCAGAATGACCTGTCTTGAACAATTCAATCTTTCACATTGCTCAATTCTTGAGGGTTTCCCAGAAATATTGGGGAAGATGGAAAATATAACGGAACTTCATATAACTGGGAGTCCCATAAAAGAATTGCCATTCTCAATTCAAAACCTTACTCGGCTTCAAAAACTAGAACTGCAACTCTGTGGAATGGTTTGTATGCCAAGTAGCATTGTCATGTTGTCAGAGCTGGGTTTGATGTGTGTTTCACAATGTGAAGATTTGCAGTTAACTAAACTGGACAAAGGTGAAAAAATGATGTCCAAGTCTTCAATCATGGAATGTCTTATTCTGTCGTACTGCAATATATCAGATGACTTCCTTCCAACAGGTCTCACTTTGTTTGCCAATGTGAAAGATTTAAACCTGTCCGGGAATAATTTCAAAGTTCTTCTTGCATGCTTCAAAGAATGTCACCTTTTGAGGAACCTCAAGCTGGAAGACTGCAGATTTCTAAGAGAAATTAAGGGGATTCCATTGAAATTAGAAACATTGTCTGTGAAAGGATGCAGGTCCTTAAAACTCTTAGACCTTACTGTTCTTCCTGCATGCACTGAAGGATGTCACTATCTGAAGGAACTGATTTTGGATGATTGTGTGTATCTTCAAGAAATTGGAGGACTTCTACCAAAGTTGGATCATTTCTCTGCAAAAAATTGCACATCTTTGACTTCCAGATGTGCAAGCACGTTGCTGGATCAGGAATCTATAGAGGATGGAAACAAGATGTTTTCTTTGCCAGCAACAAAGATTCCAGAGTGGTTTGCACTCCGTACAGGTGGAGAGTCCATAACCTTCTGGTTTCGTAACAAATTCCCTGCAATTTATATCAGTCTTGTTATTGGACCTGTGGATGAGCAACCTATCACAGTCAAATTTAGCCCCAGAATATTCATCAATAGCAATAAACTATTCCTTGGGAATCAGAAAGCTTACGAGTTCAGTATAGCAACAGATCATATAATTTTGCTTGATATGCAGTTGCTAAATTTTGAAGATAATGCCGGCATAATGCTTTCAGATGATAAGTGGAATCATGTGGAGGTTTTTCACTAG	3138	0.4003	MAGEATFSHDVFLSFRGEDTRRSFTSHLYDALSQRGISTFFDMELERGYEIWQAISKAVEESSVAIILFSQNYASSTWCLDELALIIDRFEEKKLRHVLPVFYGVDPSDVRHQRGSYGEALARHEERFKDDIEKLNVVSRWMRALHHASDLSGFDSRTFSYEPELIGMIVKEVSRMINHGLRVPLHVADYPVGLESRMLKVTSLLNVETDDGVRMVGIHGTGGIGKTTIARAVFNSISDQFECSYFLEDVRVNSAKHGLVHLQEMVLSAILGDMNIDLRNVNQGILEIKERLRRKKVLLVLDDVDKIEQLQAVVGGLGWFGSGSRVIITTREERLLALHRVESSYRVEELSDKEALALLTWNAFKTDKVDPSYTDMLNRAVTYASRLPLDLQVMGSYLFGKSRDEWNEALNHFDSLEEDEKGIFLDIACFFNGQKWTDIEDILCAHHGLSTKISIEALVAKSLINIDDGLVILHDLIQDMGREIVQQESRYEPGKRSRLWSFKDVVQVLEQNAGSSTIERIFLDFPKDDGPKGERVHWDGEAFKKMKNLKTLIIRNGHFNKGPAHLPPSLRVLKGWGYPSRSLPDDFHPKKLAILELPESCLRISAPIQASLSMCPCILKILDFGYCEQITCIPDVSGLPNLEKLSFKHCENLSEIHQSVGFLDKLRILDAVCCKKLRTFPPIRMTCLEQFNLSHCSILEGFPEILGKMENITELHITGSPIKELPFSIQNLTRLQKLELQLCGMVCMPSSIVMLSELGLMCVSQCEDLQLTKLDKGEKMMSKSSIMECLILSYCNISDDFLPTGLTLFANVKDLNLSGNNFKVLLACFKECHLLRNLKLEDCRFLREIKGIPLKLETLSVKGCRSLKLLDLTVLPACTEGCHYLKELILDDCVYLQEIGGLLPKLDHFSAKNCTSLTSRCASTLLDQESIEDGNKMFSLPATKIPEWFALRTGGESITFWFRNKFPAIYISLVIGPVDEQPITVKFSPRIFINSNKLFLGNQKAYEFSIATDHIILLDMQLLNFEDNAGIMLSDDKWNHVEVFH	1045

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g02770	1045	PRINTS	Disease resistance protein signature	291	305	-	-
	Pumo10g02770	1045	PRINTS	Disease resistance protein signature	384	398	-	-
	Pumo10g02770	1045	PRINTS	Disease resistance protein signature	215	230	-	-
	Pumo10g02770	1045	PRINTS	Disease resistance protein signature	637	653	-	-
	Pumo10g02770	1045	Gene3D	Ribonuclease Inhibitor	539	703	IPR032675	-
	Pumo10g02770	1045	FunFam	Disease resistance protein (TIR-NBS-LRR class)	5	179	-	-
	Pumo10g02770	1045	ProSiteProfiles	TIR domain profile.	7	177	IPR000157	GO:0007165
	Pumo10g02770	1045	SMART	till_3	8	151	IPR000157	GO:0007165
	Pumo10g02770	1045	Gene3D	-	4	177	IPR035897	-
	Pumo10g02770	1045	Pfam	TIR domain	9	176	IPR000157	GO:0007165
	Pumo10g02770	1045	Gene3D	-	349	424	IPR042197	-
	Pumo10g02770	1045	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	154	IPR035897	-
	Pumo10g02770	1045	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	427	IPR027417	-
	Pumo10g02770	1045	Gene3D	Ribonuclease Inhibitor	704	943	IPR032675	-
	Pumo10g02770	1045	SUPERFAMILY	L domain-like	537	868	-	-
	Pumo10g02770	1045	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	9	751	IPR044974	GO:0006952
	Pumo10g02770	1045	Gene3D	-	178	343	IPR027417	-
	Pumo10g02770	1045	Pfam	NB-ARC domain	198	415	IPR002182	GO:0043531
	Pumo10g02770	1045	SUPERFAMILY	"Winged helix" DNA-binding domain	413	510	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g02770	Pumo-Chr10	52256905	52270662	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo10g02770	9	815	WRKY Transcription Factor Family	AT4G12020	31.132	2.72e-82	292

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g02770	-		-	mtr:25501119	1177.16