Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02727 ATGTCTGAAGGGTATTCGTGTGGCTGTTCCGACTCGGACCCTTCGTGCGGTTGTTGGTCCACCAGCACCACCAGCAGCAGCACCAGATCTGAGGCCTCAACCGAACTCAAACTGTACCGAGCATTCATATTCTGTGTTCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTATCTCTTCTACCTCCGACCGCGAACAAGGCTTCATTGGATCACACACTTTGGCCTTCCCAACAACAACAACAATGCCATCTCCACGGCCGATTTGGGCTTGAACAAAGAACTCAGAGAGATGCTGCCCGTTATTGTCTACAAGGAAAGCTTCTCTGTCAAAGATACTCAATGCTCAGTGTGCCTTTTGGACTACCAGGCAGAGGATAGGCTGCAACAGATACCTGCATGTGGCCATACATTTCATATGAGCTGCATTGATCTTTGGCTTGCCACCCACACCACCTGCCCTCTCTGCCGCTTCTCCCTACTAACCCCTGCTAAATCTTCAACACAAACATCCGATATGCAGTCACAGAACAATGAAGAAACACAAGCCATGGAATTCTCTGAATCAAGATCTACTAGGCATCTAGAAACCACTGTCCCTCAAAATGTCTCTGGAGAAGTTGCAATCAGCGCTCACTGCATTGAAGTTGAAGGGCAAAATGTGCAAAACAGTCAATAA 681 0.4772 MSEGYSCGCSDSDPSCGCWSTSTTSSSTRSEASTELKLYRAFIFCVPIFFTLILLFLFYLFYLRPRTRLHWITHFGLPNNNNNAISTADLGLNKELREMLPVIVYKESFSVKDTQCSVCLLDYQAEDRLQQIPACGHTFHMSCIDLWLATHTTCPLCRFSLLTPAKSSTQTSDMQSQNNEETQAMEFSESRSTRHLETTVPQNVSGEVAISAHCIEVEGQNVQNSQ 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02727 226 PANTHER OS11G0150450 PROTEIN 81 199 - -
Pumo10g02727 226 MobiDBLite consensus disorder prediction 168 193 - -
Pumo10g02727 226 MobiDBLite consensus disorder prediction 1 26 - -
Pumo10g02727 226 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Pumo10g02727 226 Pfam Ring finger domain 115 158 IPR001841 -
Pumo10g02727 226 SUPERFAMILY RING/U-box 100 164 - -
Pumo10g02727 226 SMART ring_2 116 157 IPR001841 -
Pumo10g02727 226 CDD RING-H2_EL5-like 115 158 - -
Pumo10g02727 226 FunFam RING-H2 finger protein ATL7 81 164 - -
Pumo10g02727 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 165 IPR013083 -
Pumo10g02727 226 MobiDBLite consensus disorder prediction 168 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02727 Pumo-Chr10 51017997 51021883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02727 21 221 C3H Transcription Factor Family AT4G10150 52.153 1.37e-60 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02727 K19039 - gmx:100794211 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02727 10 51017997 51021883 Pumo10g02727 10 51017997 51021883 ECH