Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02725 ATGGAAAGAGAGTTTGAGAGAGGATACATAAAGAAGGGGCCATGGAGTAGTGAGGAAGATGAGGTGCTGTTGAGACACGTCAGCAAATATGGTCCTAGGGAATGGAGCTCCATTCGATCCAAAGGCTTCTTGCCCAGAACAGGAAAATCTTGTCGCCTTCGATGGGTTAACAAACTTAGACCCAACTTGAAGACTGGGTGCAAGTTTACTGCAGAAGAAGAAAGGTTGGTGATAGAATTACAGGCACAGTTTGGGAACAAATGGGCCAAAATTGCAACGTATTTGCAAGGGAGAACCGACAATGATGTGAAAAACTTCTGGAGCAGTAGGAGGAAAAGGTTGGAGAGGATGTTGCAGAAGCCACCAACGTCTAAGCCGCAGAAAAACAAAGCAAAAACTCCTCTTAATCAAGTGCATGTGGAAAAGGTTCCTCCTCCTCCTCCATGCAGTTCCAATCAGGTGGAGGAAATTCTTTCTTACCCTACTTGCTATACGGGAAACACCCAAGTGTTCGAGATGATGAACCTACCATATTTGATAAAGCCAAACTATCATCATCAACAGTTGGACAATGATTATCTCAGTGCAGTTGAGGTTGAGGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGTACAACTTCCCTCTACTCCCTGAACCTGAACCTGAACCACTAATGGACTTTCCACTATTCCCAGAGTGCCCTGAGCCCTTTGATCCAAATTTTGTTGATGGGTTCGAGGAGAAAAAATGTTCAGAATGTGTATGCAGCCAGATGCTTGGAAACAGGTTGCCAACTTTTGGATTCGAAGGAAATTCTCAAAGTACAAGTTCAAATGGCTTTTTCAAGGACTTCCCAAGCGACATTTTTGAATACTTTGAGCACATTCCAACCTCATCAGAACAATGA 921 0.4408 MEREFERGYIKKGPWSSEEDEVLLRHVSKYGPREWSSIRSKGFLPRTGKSCRLRWVNKLRPNLKTGCKFTAEEERLVIELQAQFGNKWAKIATYLQGRTDNDVKNFWSSRRKRLERMLQKPPTSKPQKNKAKTPLNQVHVEKVPPPPPCSSNQVEEILSYPTCYTGNTQVFEMMNLPYLIKPNYHHQQLDNDYLSAVEVEATPLHTVPSFESSSGYNFPLLPEPEPEPLMDFPLFPECPEPFDPNFVDGFEEKKCSECVCSQMLGNRLPTFGFEGNSQSTSSNGFFKDFPSDIFEYFEHIPTSSEQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02725 306 Pfam Myb-like DNA-binding domain 15 65 - -
Pumo10g02725 306 Gene3D - 11 64 - -
Pumo10g02725 306 Gene3D - 67 139 - -
Pumo10g02725 306 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Pumo10g02725 306 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Pumo10g02725 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 55 IPR017930 -
Pumo10g02725 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Pumo10g02725 306 FunFam Transcription factor GAMYB 67 136 - -
Pumo10g02725 306 CDD SANT 68 107 IPR001005 -
Pumo10g02725 306 CDD SANT 14 59 IPR001005 -
Pumo10g02725 306 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Pumo10g02725 306 PANTHER TRANSCRIPTION FACTOR DUO1 5 305 - -
Pumo10g02725 306 FunFam MYB transcription factor 12 64 - -
Pumo10g02725 306 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Pumo10g02725 306 SMART sant 11 61 IPR001005 -
Pumo10g02725 306 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02725 Pumo-Chr10 50995438 50996787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02725 4 119 MYB Transcription Factor Family AT3G60460 77.586 2.07e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g02725 Myb_DNA-bind_6 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02725 K09422 - gmx:121173231 503.056