Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02712 ATGGAGCTTGATTTGAATCAGGAGCCTTCGGAACCAACTCGTGCTTCTCCAGATGAATTTGATTCTTTGTTGGAAGAACTAGAATCTGCCCATGAACATGTGCAGGACCGTATTAGGCGCCTTGAAGCGATAACTTCCAGAAGCAGGCAGTATCAGAGGTGGCCTCTGTTTCACACTCCAATCCAAATAACCAACTTTACAGGACAAACCAGTGCGCCAGCTGATGCTCCCGAAGAAGGAATGCAGAGCCGGGAGGTTGAGGAAAGAGTCGTTGAAAGTGGGAGAGGGTGCAAAAGGAAAGGTGCCCATTTAATAGCTAAGGCATTGGGGAGGATTGAAACAGATGCCAGTAAGGAAGGGGGAAGCACTGGAAATGTCTATGATTGCAATATATGCTTGGACAGGGCAAGAGATCCTGTTTTGACCTGCTGTGGTCACTTGTTTTGTTGGTCATGCTTCTATCAGGTGCAAATTGTCTATTCAAATGCAACAAGAGAGTGCCCTGTTTGTAAAGGAGAGGTCACTGAAGCTGGCATTATTCCGATTTATGGCAATTCGAGTGCCGATGGCAGTTGTGAGTCAGGATTAAAAGGAGCTGGTTTGAGAATTCCTCCTCGACCCGCTGCACTCAGAATTGAGAGTTTTAGGCAGCAGCTAATAAGCCAGGGAGCATCTTCTTCTGTAATCCAAAATATCCGGCGGTTTAATCACCTTATTGGCGGGTTAGGAGCACGAGTTCAGTCACAAAGCCCCAATGCTGCAACTGATAGAAATAATGGTTTGCTCGCTCAATCTCGTCTGCAGACAGGCAATGATCGTGGTACTGGTTCCTCTCCGACTCCGATTTCAACCTTGATAGTGCAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTGAGGACCTTGAGTCATATATTCATGATCACCAGACACATGGCGTCAATTCAAATTCATCTCATAATGGGAATGTTACTGCAACTGATTCTACAGCTGCAGCTTCTACATCTCCTTTTAGTAGGAATTTGGACACCACTGCTGATATTGGCTCAGAAATTCAGACAACAGATAGTAACATACAGACTGAGACTAGTCCATTGGACCCTTCTTCATCTCATAGGGGAAGTGCTCGTGTTTCAAATGATCGCAGAAGGAGGAGGTCAAGATGA 1203 0.453 MELDLNQEPSEPTRASPDEFDSLLEELESAHEHVQDRIRRLEAITSRSRQYQRWPLFHTPIQITNFTGQTSAPADAPEEGMQSREVEERVVESGRGCKRKGAHLIAKALGRIETDASKEGGSTGNVYDCNICLDRARDPVLTCCGHLFCWSCFYQVQIVYSNATRECPVCKGEVTEAGIIPIYGNSSADGSCESGLKGAGLRIPPRPAALRIESFRQQLISQGASSSVIQNIRRFNHLIGGLGARVQSQSPNAATDRNNGLLAQSRLQTGNDRGTGSSPTPISTLIVQGAASFSSLSSALNSAMDSAERLVEDLESYIHDHQTHGVNSNSSHNGNVTATDSTAAASTSPFSRNLDTTADIGSEIQTTDSNIQTETSPLDPSSSHRGSARVSNDRRRRRSR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02712 400 CDD RING-HC_RNF5-like 127 171 - -
Pumo10g02712 400 MobiDBLite consensus disorder prediction 322 387 - -
Pumo10g02712 400 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g02712 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 97 307 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo10g02712 400 MobiDBLite consensus disorder prediction 322 400 - -
Pumo10g02712 400 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Pumo10g02712 400 Pfam zinc-RING finger domain 129 171 IPR001841 -
Pumo10g02712 400 SUPERFAMILY RING/U-box 125 183 - -
Pumo10g02712 400 Coils Coil 24 44 - -
Pumo10g02712 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 184 IPR013083 -
Pumo10g02712 400 SMART ring_2 129 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02712 Pumo-Chr10 50896076 50898128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02712 80 385 C3H Transcription Factor Family AT3G58030 31.304 3.62e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02712 - - gmx:100794016 624.009