Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02705 ATGTTGGGTCGAGGTGCTTTCGGAACGGTCTATAAAGGGGTGTTAACATCAGATACAAGCAGGTATGTTGCTGTTAAGAGGCTAGATAAGGTGGTGCAAGAAGGTGAGAAGGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACCCACCACAGGAACTTGGTTCGTTTACTTGGTTATTGTGATGAAGGGGAGCATCGTCTTCTAGTGTATGAGTACATGAGCAATGGCTCCTTGGCTAGCTTTCTCTTTGGGATCTCAAGGCCTCATTGGAACCAAAGAGTGCAAATTGCTTTGGGGATTGCAAGAGGTCTCATGTATTTGCATGAAGAGTGCAGCACTCAGATAATTCATTGTGACATAAAGCCTCAAAATATACTCTTAGATGAGTTGTTCACGCCTAGGATTGCTGATTTTGGGTTGGCAAAGTTGTTGTTGGCTGAACAAAGTAAAGCTACTAAGACGGGTTTGAGAGGGACAATTGGTTACTTTGCACCTGAATGGTTTAGGAAGGCTTCAATCACAACCAAAGTAGATGTTTACAGTTTTGGAGTGGTGTTGTTAGAGATCATATGTTGCAAGTCAAGTGTTGCCTTTGCAATGGCTAGTGAAGAAGAGACACTTATAGATTGGGCATATCGTTGTTATAGCCAAGGGAAGGTAGCTAAATTGGTAGAAAATGATGAGGAGGCAAAGAATGACATAAAGTGGGTGGAGAAGCATGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCTCCCCTGAGACCCTCCATGAAGAAAGTTACTCAAATGCTTGAGGGCGTGACAACAGTTTCTGTGCCACCTCGCCCTTCCATATTCAGTTCATCATCATTTGAAACATCATTTACTTTGTAA 879 0.4266 MLGRGAFGTVYKGVLTSDTSRYVAVKRLDKVVQEGEKEFKTEVSVIGQTHHRNLVRLLGYCDEGEHRLLVYEYMSNGSLASFLFGISRPHWNQRVQIALGIARGLMYLHEECSTQIIHCDIKPQNILLDELFTPRIADFGLAKLLLAEQSKATKTGLRGTIGYFAPEWFRKASITTKVDVYSFGVVLLEIICCKSSVAFAMASEEETLIDWAYRCYSQGKVAKLVENDEEAKNDIKWVEKHVMVAIWCIQEDPPLRPSMKKVTQMLEGVTTVSVPPRPSIFSSSSFETSFTL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02705 292 PIRSF ILK 9 274 - -
Pumo10g02705 292 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 277 - -
Pumo10g02705 292 ProSiteProfiles Protein kinase domain profile. 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02705 292 SUPERFAMILY Protein kinase-like (PK-like) 1 267 IPR011009 -
Pumo10g02705 292 CDD STKc_IRAK 2 268 - -
Pumo10g02705 292 Pfam Protein tyrosine and serine/threonine kinase 2 266 IPR001245 GO:0004672|GO:0006468
Pumo10g02705 292 Gene3D Transferase(Phosphotransferase) domain 1 75 274 - -
Pumo10g02705 292 Gene3D Phosphorylase Kinase; domain 1 2 74 - -
Pumo10g02705 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Pumo10g02705 292 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 74 274 - -
Pumo10g02705 292 FunFam S-receptor-like serine/threonine-protein kinase 1 73 - -
Pumo10g02705 292 ProSitePatterns Protein kinases ATP-binding region signature. 2 26 IPR017441 GO:0005524
Pumo10g02705 292 SMART serkin_6 1 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02705 Pumo-Chr10 50819206 50820084 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02705 1 268 Receptor kinase-like Gene Family AT1G60800 44.891 7.91e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pumo10g02705 PK_Tyr_Ser-Thr 1.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02705 - - gmx:100796323 531.176