Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02658 ATGAGTATTATGTATAGTCATGCTGTGAAGTACTCTCAAGGGGAGACAAGGATGAACCCAGAAATGGATTCAAATATTGGTCAATATTGTCACCAACAAAATTCTGGACTAATCCGGTACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGTGAACAACAACAACAACAACAACATTGGTTGTGTCAATGGTGAAGCTTTCAGAAGTGACCATAATCATCATCATCAGCAGCATTATCCTCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCCAACAATTCTGAGCCTTTGCAAGTGAAGGAAGAAGCAGGGGACTCTGTTTCACAGCCACCACAACAACAACACAATGGTTACTCTTATGGGTCTTCACCTCAGATAATGTACCAAACTCAGCAAGTTCAAGGCTTGCCTATGCCAAATGGTTCTTTAGGGGCTTCAGGGACTGCTTTTGATGGCTCATTCAGTGCAGTGAATTCCCTTGTTTCACAGAATTCCACACAAACCAAAATGGGTGCTTCCACCAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCTGGTTTTTTCTCCAATTACTCAGTTGATAATGCATTGGGAGATGTGGCGAATTTTAGGGGCTGTGATGTCTCAAATGGACAAGCTATTACATCCTGTAGTGGTTTGCATGGTACTTTGAACTTCTCATCTAGGCCATCCTCTTGCTCCACCCGGATGCCACAGATTGCTGAAAATGGAAATGAAGGTGTGGAAGCAAATTGTGTTGAAAGTAGAAACCTGAGAAATGACAATGTCAACACTAAATGTTACATTCCTAGTTTCACCACTGACTTCTGGGATGGTTCTGCATTCAGTGCCCCCAGAACAGCTAGTAACAATGGTGAAATCTCATTTTCCACTTCAAATGCTATGGATATTCAGGATGGAGATTTTGGATATCAAAAAGTTGGTTTGACCCACCATTTGAGTCTGCCTGCCTCTTCTAGTAGGATGGCTACAGTGGAGAAGTTATATCAAATTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCGAGAAGCATTGCTGAAAGGGAAAGAAGAACACGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTTTTTCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTCAAGATGCTTACAGATACTAGGGCAAAGTGCACTTGTACAAGTAATCAGAAGCACTGA 1302 0.4224 MSIMYSHAVKYSQGETRMNPEMDSNIGQYCHQQNSGLIRYRSAPSSLLTSLVNNNNNNNIGCVNGEAFRSDHNHHHQQHYPPSTSSEMETMLAKLISSNNSEPLQVKEEAGDSVSQPPQQQHNGYSYGSSPQIMYQTQQVQGLPMPNGSLGASGTAFDGSFSAVNSLVSQNSTQTKMGASTNCSNLIRQKSSPAGFFSNYSVDNALGDVANFRGCDVSNGQAITSCSGLHGTLNFSSRPSSCSTRMPQIAENGNEGVEANCVESRNLRNDNVNTKCYIPSFTTDFWDGSAFSAPRTASNNGEISFSTSNAMDIQDGDFGYQKVGLTHHLSLPASSSRMATVEKLYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKQVKMLTDTRAKCTCTSNQKH 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02658 433 Gene3D - 363 432 IPR036638 GO:0046983
Pumo10g02658 433 SMART finulus 367 417 IPR011598 GO:0046983
Pumo10g02658 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 361 411 IPR011598 GO:0046983
Pumo10g02658 433 Pfam Helix-loop-helix DNA-binding domain 367 412 IPR011598 GO:0046983
Pumo10g02658 433 MobiDBLite consensus disorder prediction 104 130 - -
Pumo10g02658 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 424 IPR036638 GO:0046983
Pumo10g02658 433 FunFam Transcription factor bHLH130 family 362 431 - -
Pumo10g02658 433 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02658 Pumo-Chr10 49278819 49283130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02658 22 417 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 36.165 9.14e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g02658 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02658 - - gmx:100795896 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02680 4 47988171 47991317 Pumo10g02658 10 49278819 49283130 ECH
Pumo10g02658 10 49278819 49283130 Pumo10g02658 10 49278819 49283130 ECH