Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02645 ATGACAGATCCTCAGTCCAATTTGTTCCATGAATGGTTCAACTTCATGCTCCTCCACCCTCACTACTCTTCTTCTCAATCCAATTACCCTCTTGCTAATTACTCAAACAACAGGTTTGGAATTCAATTACAAGGAGCAGCAGCCTCATCTTCCTATGCAGCAGCTCCTCCTTCTTCCCCTCCTCTCAGAGAGGCCCTCCCTCTAATCAACAAGATATGCCTCACAAGTGATGAGCAGCACCAAAAGAATAATGAACACTCTTCAAATGTTGTAGATGAGAAAGAATTAGAGGACAAGAAAGTGGACAACAACAGCAAACATGAGAGTGGTGAAGATGGTGATGATGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCTAGAATGGATACTTCTTCTTCTTCTGATCTGGGGTCATCAAGGGTGGTCTCAACAACTTGTATGAAAATGGGTGAAAAAGAGGAAGTGAATATGATTTCTGAACACCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCTAAAACTTTTAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAACCAACAGCCATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGCATAAAACCCTACATGTGCAGAAATGTAGCAAAGCATTTGCAGTAA 846 0.4314 MTDPQSNLFHEWFNFMLLHPHYSSSQSNYPLANYSNNRFGIQLQGAAASSSYAAAPPSSPPLREALPLINKICLTSDEQHQKNNEHSSNVVDEKELEDKKVDNNSKHESGEDGDDETVTVALHIGLPRMDTSSSSDLGSSRVVSTTCMKMGEKEEVNMISEHPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRNVAKHLQ 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02645 281 PANTHER ZINC FINGER PROTEIN WIP2 22 280 IPR043584 GO:0003700|GO:0010468
Pumo10g02645 281 Gene3D Classic Zinc Finger 186 209 - -
Pumo10g02645 281 MobiDBLite consensus disorder prediction 78 117 - -
Pumo10g02645 281 FunFam zinc finger protein WIP2-like 186 209 - -
Pumo10g02645 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Pumo10g02645 281 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Pumo10g02645 281 MobiDBLite consensus disorder prediction 77 117 - -
Pumo10g02645 281 SUPERFAMILY beta-beta-alpha zinc fingers 183 209 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02645 Pumo-Chr10 49092942 49095419 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02645 1 278 C2H2 Transcription Factor Family AT3G57670 47.771 2.27e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo10g02645 zf-C2H2_6 2.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02645 - - gmx:100794446 489.96