Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02641 ATGACAGATCCTCAGTCCAATTTGTTCCATGAATGGTTCAACTTCATGCTCCTCCACCCTCACTACTCTTCTTCTCAATCCAATTACCCTCTTGCTAATTACTCAAACAACAGGTTTGGAATTCAATTACAAGGAGCAGCAGCCTCATCTTCCTATGCAGCAGCTCCTCCTTCTTCCCCTCCTCTCAGAGAGGCCCTCCCTCTAATCAACAAGATATGCCTCACAAGTGATGAGCAGCACCAAAAGAATAATGAACACTCTTCAAATGTTGTAGATGAGAAAGAATTAGAGGACAAGAAAGTGGACAACAACAGCAAACATGAGAGTGGTGAAGATGGTGATGATGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCTAGAATGGATACTTCTTCTTCTTCTGATCTGGGGTCATCAAGGGTGGTCTCAACAACTTGTATGAAAATGGGTGAAAAAGAGGAAGTGAATATGATTTCTGAACACCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCTAAAACTTTTAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAACCAACAGCCATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGCATAAAACCCTACATGTGCAGAAAATGTAGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAAAAGAACTGTGGCAAAATATGGTATTGTTTATGTGGGTCTGATTTCAAACACAAAAGGTCCCTAAAAGACCACATCAAGGCCTTTGGCTATGGCCATGGATCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAGCCTCTGAAATTGAACATGATGGGGAGAGTTCAATGTGA 1047 0.4269 MTDPQSNLFHEWFNFMLLHPHYSSSQSNYPLANYSNNRFGIQLQGAAASSSYAAAPPSSPPLREALPLINKICLTSDEQHQKNNEHSSNVVDEKELEDKKVDNNSKHESGEDGDDETVTVALHIGLPRMDTSSSSDLGSSRVVSTTCMKMGEKEEVNMISEHPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGSFGIDCLQEEDEAASEIEHDGESSM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02641 348 MobiDBLite consensus disorder prediction 78 117 - -
Pumo10g02641 348 SMART c2h2final6 271 291 IPR013087 -
Pumo10g02641 348 SMART c2h2final6 187 209 IPR013087 -
Pumo10g02641 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Pumo10g02641 348 Pfam C2H2-type zinc finger 187 206 - -
Pumo10g02641 348 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Pumo10g02641 348 Gene3D Classic Zinc Finger 240 320 - -
Pumo10g02641 348 MobiDBLite consensus disorder prediction 77 117 - -
Pumo10g02641 348 FunFam zinc finger protein WIP2-like 186 209 - -
Pumo10g02641 348 PANTHER ZINC FINGER PROTEIN WIP2 23 342 IPR043584 GO:0003700|GO:0010468
Pumo10g02641 348 SUPERFAMILY beta-beta-alpha zinc fingers 183 209 IPR036236 -
Pumo10g02641 348 FunFam Zinc finger protein WIP2 240 322 - -
Pumo10g02641 348 Gene3D Classic Zinc Finger 186 209 - -
Pumo10g02641 348 SUPERFAMILY beta-beta-alpha zinc fingers 255 291 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02641 Pumo-Chr10 49014927 49017503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02641 1 341 C2H2 Transcription Factor Family AT3G57670 54.133 1.69e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo10g02641 zf-C2H2_6 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02641 - - gmx:100794446 645.966