Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02639 ATGAATGATGGTAGACAAATGGGGGTGCATTACGTAGACGCTGGGTTCCCTTATGCTGTTAATGAAAACTTTGTGGATTTCTTTCAAGGATTCACTCATGTGCCCGTCAATTATGCCTTTGCTGGCTCAATGCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGCCCTGGGAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCGAGAATGGAGATTGATAGGGCTGAGTGGGAATACCCTTCGACAATTACCACTGTGGAAGAACCAGCTACAACAGATTCTCCACCTAGAAGAGATGGAGTCACGAGCATGCAGACCATCCCTGAAGAATGTTATGTTGCATTGGTGCAGGTCATATGGCAAGACAACATCGATCCTGATAATATGACTTATGAGGAACTACTGGACCTGGGGGAGGCAGTTGGGACTCAAAGCCGAGGTCTTTCCCAAGAACTTATTGATATGCTTCCAACCTCAAAGTACAAATTTGGTAGCTTATTCAAAAGAAAAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGACATACAGAAGAGGGGACCAGCAAATGAAATTGCCATGCAGCCATGTCTATCATGGTGAATGCATCACCAAGTGGCTTAGCATTAACAAGAAATGTCCTGTATGCAACACTGAGGTTTTTGGCGAGGAATCGACGCATTAG 726 0.4339 MNDGRQMGVHYVDAGFPYAVNENFVDFFQGFTHVPVNYAFAGSMPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRAEWEYPSTITTVEEPATTDSPPRRDGVTSMQTIPEECYVALVQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESTH 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02639 241 Pfam Ring finger domain 189 231 IPR001841 -
Pumo10g02639 241 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Pumo10g02639 241 SMART ring_2 190 230 IPR001841 -
Pumo10g02639 241 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 237 IPR033276 GO:0004842|GO:0016567|GO:0046621
Pumo10g02639 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Pumo10g02639 241 SUPERFAMILY RING/U-box 189 235 - -
Pumo10g02639 241 FunFam E3 ubiquitin ligase BIG BROTHER 152 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02639 Pumo-Chr10 48879936 48886755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02639 9 241 C3H Transcription Factor Family AT3G63530 54.622 5.59e-97 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02639 K19045 - gmx:100792734 478.018