Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02637 ATGAGGAAACCTGATCTGATGGCCAACAAGGACAAAATGAACAACATTAAGAGCAAGTTGAGAAAAGGGTTGTGGTCACCAGATGAAGATGAGAGGCTCATAAGGTACATGTTGACAAATGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATCAATTACTTGAGACCTGACCTCAAGCGTGGTGCATTCTCACCCCAAGAGGAAGACCTCATCATTCATTTGCATTCCATTCTTGGCAATAGGTGGTCACAGATTGCAGCACGTCTCCCAGGCCGCACAGACAATGAGATAAAGAATTTCTGGAACTCCACATTGAAGAAAAGGTTGAAAACTAACACTTCTACTCCCTCACTAAACAACAGCACTGGCTCATCAGAGTCTAAAGATGTTTTGAATGGGATCATGCCCTTTAATGAACATGACATCATGACCATGTGCATGGATTCCTCTTCATCCATATCATCCATGCAAGCAATGGTTTTGCCTGACCAATTTGACCCATTTTCCATGTTGGTAAATAATCAGTGTGACATGACTAATGTTTCAGCAGATTTTCCCAACATGCCTGCTGCATGCTTGACTCAAATTGGCATGGTAGAGGGGCATCAAGGGAATTATGGGATATTGGAGCCAAATAAAATGGGGTTAGGAAGAGACTTCTCCCTTCCTTCATTAGAAAGTAGAAGCATTGAAAGCAATAGTGTCCCAATTGATGTGAAAAGCCATAACAACCACTTCAATTATGGTTCCTTCAATAACACTGATAAGATTCAGGGCTCCAAAGTAGAGGACTTAATTGGGTTTGGAAATAATGGCCAAGGGGAAAATTTAAAAATGGGAGAGTGGGATTTTGAGAATTTGATGCAAGACATAACCTCTTTTCCTTTCCTTGATTTTTAA 945 0.4169 MRKPDLMANKDKMNNIKSKLRKGLWSPDEDERLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNTSTPSLNNSTGSSESKDVLNGIMPFNEHDIMTMCMDSSSSISSMQAMVLPDQFDPFSMLVNNQCDMTNVSADFPNMPAACLTQIGMVEGHQGNYGILEPNKMGLGRDFSLPSLESRSIESNSVPIDVKSHNNHFNYGSFNNTDKIQGSKVEDLIGFGNNGQGENLKMGEWDFENLMQDITSFPFLDF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02637 314 MobiDBLite consensus disorder prediction 126 145 - -
Pumo10g02637 314 CDD SANT 77 120 IPR001005 -
Pumo10g02637 314 SMART sant 21 71 IPR001005 -
Pumo10g02637 314 SMART sant 74 122 IPR001005 -
Pumo10g02637 314 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Pumo10g02637 314 Gene3D - 19 75 - -
Pumo10g02637 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Pumo10g02637 314 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Pumo10g02637 314 CDD SANT 25 69 IPR001005 -
Pumo10g02637 314 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Pumo10g02637 314 PANTHER MYB DOMAIN PROTEIN 55 15 238 - -
Pumo10g02637 314 FunFam Transcription factor MYB46 76 145 - -
Pumo10g02637 314 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Pumo10g02637 314 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Pumo10g02637 314 FunFam MYB transcription factor 19 75 - -
Pumo10g02637 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Pumo10g02637 314 Gene3D - 76 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02637 Pumo-Chr10 48855438 48858036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02637 1 314 MYB Transcription Factor Family AT3G08500 46.499 6.34e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g02637 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02637 K09422 - gmx:100784755 600.127