Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02620 ATGAGTTATGCTGATCAAGAAAATGATTCACTGCGTGCTCTTTATGAGGTTTCATCGAGAGGTATTGTATCTGAGCTAGACAATCTAATAGGGAGAGACCCACTTATCCTACACAGGCTTTCCTTAACAACCTTCACTGAAACCCCCTTACACATATCAGCTTTACTTGGTCACCTTGATTTCACAAAGTCCCTTCTCACTCACAAACCTCAACTCGCCCTTGAGTTGGACCTCTCCAAACGCACCCCTCTTCATCTAGCTTCGGCACAAGGCCATGTAGAGATTGTTCATGTTTTGCTGCAAACATATGAAGATGCGTGCTTGATGAGAGATCAAGTTGGGAGAATTCCTCTCCACTATGCAGCTATGAGAGGACGAACAGAAATAGCAACAATGCTGATTAGAGCAAAGCCTGAGTCATTGATATTGGAGATTGATGGATCAGGAAAAACTCTGTTGCACCTCTGTGTTGAGCACAATCACTTGGAGACCTTGAAAACATTGGTGCAAGTGGGAGATCTTAGTGGTGATTTTCTAAACAAAAGAGACTTGCATCATGGTAATACCATTTTGCACCTTGCTGTCACCTTAAAGCAAGTTGAGACTATAAGGTACTTGCTTTCGATATCCAAAATAAGAGAAGAAGCAAACCTTGAGAATAAGATGGGTTGTACTGCTTTGGACATGTTAGTGGATGATGGCATCATGAACAATGGACTGAACCAAACACAGTCACTGCCACCAACAACCACAGGAGTTGATTCGGAGCCAAATGAAAAGTATTGGGGAAGGTTTTTCAGACGGAGTAAAAGGTTCTTACAAGATCAGGGTGATAGGCTGGAACATATGAGAGGGATGCTAAGTGTGGTAGCTACAATGATCTCAAGCATGACCTTTAATGCTATATTGAATCCTCCAGGAGGTGTTATACAAGCAAATGGGCCTTCAGACATACTTAATTGCACACACAGCAAATTATGTCCAGGGAAAGCAGTATTAAGTACCAAAGAATATTACTTTCCACTTTTCGTAATGTTCAACTCCATCTCTTTCGTTACATCGTTTAGTATTAGTCTCTTACTTGTAAGTGGATTCCCCTTAAAGAATGAAGTCATGATGGGTCTCTTATCAATAGGCACGGGTGTCACTCTCACATTTCTTGTGCTTTCCTACAATTTTGCCGGGTACATGTTGGGCCTTTTCTCGTCTAATCAATACATGTTATATTTTTGGCTTCTATTTTTTGCGCTAATCCTTACGTTCATCAGCCTACCCCGTTTAACTTCTTGCCAGAAAAAAGTTATGATGAAACACGGAGCAGAGGTTCAAAACTAG 1335 0.4127 MSYADQENDSLRALYEVSSRGIVSELDNLIGRDPLILHRLSLTTFTETPLHISALLGHLDFTKSLLTHKPQLALELDLSKRTPLHLASAQGHVEIVHVLLQTYEDACLMRDQVGRIPLHYAAMRGRTEIATMLIRAKPESLILEIDGSGKTLLHLCVEHNHLETLKTLVQVGDLSGDFLNKRDLHHGNTILHLAVTLKQVETIRYLLSISKIREEANLENKMGCTALDMLVDDGIMNNGLNQTQSLPPTTTGVDSEPNEKYWGRFFRRSKRFLQDQGDRLEHMRGMLSVVATMISSMTFNAILNPPGGVIQANGPSDILNCTHSKLCPGKAVLSTKEYYFPLFVMFNSISFVTSFSISLLLVSGFPLKNEVMMGLLSIGTGVTLTFLVLSYNFAGYMLGLFSSNQYMLYFWLLFFALILTFISLPRLTSCQKKVMMKHGAEVQN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02620 444 ProSiteProfiles Ankyrin repeat region circular profile. 79 101 - -
Pumo10g02620 444 SMART ANK_2a 148 180 IPR002110 GO:0005515
Pumo10g02620 444 SMART ANK_2a 79 108 IPR002110 GO:0005515
Pumo10g02620 444 SMART ANK_2a 45 74 IPR002110 GO:0005515
Pumo10g02620 444 SMART ANK_2a 113 142 IPR002110 GO:0005515
Pumo10g02620 444 SMART ANK_2a 186 215 IPR002110 GO:0005515
Pumo10g02620 444 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
Pumo10g02620 444 ProSiteProfiles Ankyrin repeat region circular profile. 113 135 - -
Pumo10g02620 444 Pfam Domain of unknown function 279 394 IPR026961 -
Pumo10g02620 444 ProSiteProfiles Ankyrin repeat profile. 186 208 IPR002110 GO:0005515
Pumo10g02620 444 Pfam Ankyrin repeat 186 207 IPR002110 GO:0005515
Pumo10g02620 444 ProSiteProfiles Ankyrin repeat region circular profile. 186 208 - -
Pumo10g02620 444 Pfam Ankyrin repeats (3 copies) 38 102 IPR002110 GO:0005515
Pumo10g02620 444 Pfam Ankyrin repeats (3 copies) 114 171 IPR002110 GO:0005515
Pumo10g02620 444 Gene3D - 2 240 IPR036770 -
Pumo10g02620 444 PANTHER HOMEOBOX PROTEIN WARIAI 23 398 - -
Pumo10g02620 444 SUPERFAMILY Ankyrin repeat 43 232 IPR036770 -
Pumo10g02620 444 ProSiteProfiles Ankyrin repeat profile. 113 135 IPR002110 GO:0005515
Pumo10g02620 444 ProSiteProfiles Ankyrin repeat region circular profile. 148 172 - -
Pumo10g02620 444 ProSiteProfiles Ankyrin repeat profile. 148 172 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02620 Pumo-Chr10 48566396 48570287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02620 21 317 Miscellaneous Gene Families AT4G10720 30.094 7.53e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02620 - - gmx:100796407 598.971