Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo10g02612 | ATGGGAAAGAAGAACAAAGTGAAGGAAAATGGAGGCAAAGAGTATTGCCCATCAACTCTTTTTGTCTCCAACTTGCCCTATTCCTTTTCCAATTCTCAGTTGGAGGAGATGTTCAGTGAGGTTGGACCTGTCAGGCGTTGCTTCATGGTCACACAAAAAGGGTCAGCCCAAAATCGTGGTTTCGGTTACGTCCAATTTGCTGTTGAGGAAGACGCTAACCGTGCTATTGACCTGAAGAATGATATATCTGTTGAAGGCCGGAAAATTGTAGTGAAGCATGCAATGCCTCGTCCTCCCCGTGAAGAACGACAATCAAAAGCGGGCAAGACAGATGATGTCACGAAGCCAAGAGACAATGATGAAGATGGCAGATCATTTGGAGCAGAGAAGAATGTTTCAGTTTTTAAGGAAGAAGAAGTACAAGTCAGTAAACAAAAAAACTCAAGGAAGCCCATGGAAACGAAAAAATCAGCTCTTTGTGATGGTGTAGCAGATGAGGGTGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCATAAATTCTGATATGGCTGAAGAAGTTCACAGCCAAGCCAGAGAGATTGGCACTGTGTGTTCAATTAAGTACCCTCTATCAAGGAATGATCTTGAGCAACATGGTCTCCTGCAAGATGGATGTACTTTGGATGCTTCAGCTGTGCTTTATACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAACATTACATAAAAAAGTGATAGGAGGGGGAACTGTTTGGGCACGCCAACTGGGTGGAGAGGGCTCCAAGAGTCAGAAATGGAAGCTTATTGTCAGAAACATTCCTTTCAAGGCAAAAGAGAATGAAATAAGAGATATGTTTTCATCTGCAGGGTATGTGTGGGATGTATTTATTCCAAAGTCAGACTCAGACACAGGTCTGTCTAAGGGTTATGCATTTGTAAAATTCACCTGCAAGCAAGATGCAGATAAGGCCATTAAAAAGCTCAATGGATTAAAGTTTGCAAAACGACCCATAGCTGTTGATTTTGCTGTTTCAAAAAAGATATTTAGCAGTGATACTAATAATGCTCCTGCCTCAGAGAATGGACAACAAAGCATGAGCAATGAGGATAGTACCGATGAAGATTTCGAGCTTGTTGATAAAAGATCCGGTCAAGGAGATGATATTGATACAGAGTACACTAGTGCCATGGAGGAAGAAGGCACTCCTGAAGATAATTTTGATAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGCTTACATCCTCGAGCAAAGGAACATCTGTAAACAATGATTCTGTGTTGACCAAAGAAAACAAGGAGTCAAGATCAAATGAAATTGTTAAGGATGCAGATGGAAAAGACTCTAATGAGTCTGAAAAGGTTTCAGGTGTTTCTAAGCCTGAAATTTCCAGCAGAAACAACTTATCAAATCCTAAGGGAACAGAAGAAGATGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAACGAAGAAGTGAAACAACGATTTTCTGGATTTGGGGAAGTAGAATACTTTGTTCCTGTTCTTCACCAAGTTACCAAGCGACCGAGAGGGACTGGTTTTCTAAAATTTAAAACTGTAGAAGCAGCTAATACCGCAATTTCAACTGCCAGTGCTGCTTCTGGGATGGGTATTTTACTGAAGGGTAGACCATTAAAAGTTTTAAAGGCTTTGGATAAGAAATCAGCACATGACAAGGAACTTGAGAAAGCAAAAAATGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGAACTACAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGTCAAGAGTTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTCGTTATCTACAACTTACCCAAGTCAATGAATGAGAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATCAAGTTTTTGAAAAATGAAAAGAAAGGAAAGGTTGCTCAAGAACGCTATTCACGGGGAGTTGCCTTTGTTGAATTTTCAGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAATAATCCTGAAACATTTGGTCCTGAACATCGGCCGATTGTGGAGTTTGCTCTTGATAACGTTCAAACACTTAAACTTCGGAAGGCGAAGCTACAATCTCAGCAGCAAGCTCCTCAAGATGACAACACTGCCATGGAAAATGACAAACCTGGCATGGTAGAAGGTCGCAAGCCTGTGAAGGACAGAAAACGAAAATCTCGAGAGCATGACGAACCAGCAAAGGAAAGAGTACTGAATACAAATGGTGAATCAGGTGGTTCAGTGGCAAATGGAAAATCCCCTCAAGGACAGTCCATAAGACAGAAAGGCAACAATAAGAGTAAAAGGGCACTGAAAGAAAATCCAGAAGCCTTTTCCATGAATTTAAAGAATAACCAAAATGGCCAGAAACATGGTGGTGCATCTCTTGAAATTCAAAACACTGCCACTGACTCTAACAGAAGAAAATCAGGGAACAAAGATGATGTGGGGTTTAGAAAAAGGAAGATGCAAAACCAAGAAGAAGCAGGCCAAAAGGTTTCTAAGAAACGGCCTAAGAAGAATAAAGATTCAGTAGGGAAGGACGTAGTGGATAAGCTTGACATGCTTATAGAACAATATAGGTCCAAGTTCTCACACAAGGGTTCCCAAGAGAATGATGGAGAGAAAAAACCTTCTAAACAGCTTAGGAAATGGTTCCAATCATAG | 2865 | 0.4084 | MGKKNKVKENGGKEYCPSTLFVSNLPYSFSNSQLEEMFSEVGPVRRCFMVTQKGSAQNRGFGYVQFAVEEDANRAIDLKNDISVEGRKIVVKHAMPRPPREERQSKAGKTDDVTKPRDNDEDGRSFGAEKNVSVFKEEEVQVSKQKNSRKPMETKKSALCDGVADEGGCSEKQRVARTVIFGGLINSDMAEEVHSQAREIGTVCSIKYPLSRNDLEQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKVIGGGTVWARQLGGEGSKSQKWKLIVRNIPFKAKENEIRDMFSSAGYVWDVFIPKSDSDTGLSKGYAFVKFTCKQDADKAIKKLNGLKFAKRPIAVDFAVSKKIFSSDTNNAPASENGQQSMSNEDSTDEDFELVDKRSGQGDDIDTEYTSAMEEEGTPEDNFDKEADIARKVLNNLLTSSSKGTSVNNDSVLTKENKESRSNEIVKDADGKDSNESEKVSGVSKPEISSRNNLSNPKGTEEDDLQRTVFISNLPFECDNEEVKQRFSGFGEVEYFVPVLHQVTKRPRGTGFLKFKTVEAANTAISTASAASGMGILLKGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNLYLAKEGLILEGTTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLVIYNLPKSMNEKELKKLCIDAVISRATKQKPVIRQIKFLKNEKKGKVAQERYSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQQQAPQDDNTAMENDKPGMVEGRKPVKDRKRKSREHDEPAKERVLNTNGESGGSVANGKSPQGQSIRQKGNNKSKRALKENPEAFSMNLKNNQNGQKHGGASLEIQNTATDSNRRKSGNKDDVGFRKRKMQNQEEAGQKVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKGSQENDGEKKPSKQLRKWFQS | 954 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo10g02612 | 954 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 272 | 351 | IPR000504 | GO:0003723 | |
| Pumo10g02612 | 954 | FunFam | Putative RNA binding ribonucleoprotein | 425 | 594 | - | - | |
| Pumo10g02612 | 954 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 96 | IPR000504 | GO:0003723 | |
| Pumo10g02612 | 954 | FunFam | RNA-binding motif protein 28 | 648 | 743 | - | - | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 92 | 130 | - | - | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 755 | 954 | - | - | |
| Pumo10g02612 | 954 | CDD | RRM2_RBM28_like | 273 | 350 | - | - | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 444 | 470 | - | - | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 358 | 395 | - | - | |
| Pumo10g02612 | 954 | Coils | Coil | 740 | 760 | - | - | |
| Pumo10g02612 | 954 | CDD | RRM1_RBM28_like | 19 | 97 | - | - | |
| Pumo10g02612 | 954 | CDD | RRM4_RBM28_like | 649 | 746 | - | - | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 776 | 803 | - | - | |
| Pumo10g02612 | 954 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 274 | 344 | IPR000504 | GO:0003723 | |
| Pumo10g02612 | 954 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 89 | IPR000504 | GO:0003723 | |
| Pumo10g02612 | 954 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 499 | 557 | IPR000504 | GO:0003723 | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 907 | 948 | - | - | |
| Pumo10g02612 | 954 | SMART | rrm1_1 | 650 | 741 | IPR000504 | GO:0003723 | |
| Pumo10g02612 | 954 | SMART | rrm1_1 | 498 | 576 | IPR000504 | GO:0003723 | |
| Pumo10g02612 | 954 | SMART | rrm1_1 | 19 | 92 | IPR000504 | GO:0003723 | |
| Pumo10g02612 | 954 | SMART | rrm1_1 | 273 | 347 | IPR000504 | GO:0003723 | |
| Pumo10g02612 | 954 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 497 | 580 | IPR000504 | GO:0003723 | |
| Pumo10g02612 | 954 | Gene3D | - | 648 | 743 | IPR012677 | - | |
| Pumo10g02612 | 954 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 649 | 757 | IPR000504 | GO:0003723 | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 806 | 830 | - | - | |
| Pumo10g02612 | 954 | Coils | Coil | 575 | 602 | - | - | |
| Pumo10g02612 | 954 | Gene3D | - | 428 | 594 | IPR012677 | - | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 844 | 872 | - | - | |
| Pumo10g02612 | 954 | SMART | rrm2_1 | 19 | 92 | IPR003954 | GO:0003676 | |
| Pumo10g02612 | 954 | SMART | rrm2_1 | 273 | 347 | IPR003954 | GO:0003676 | |
| Pumo10g02612 | 954 | SUPERFAMILY | RNA-binding domain, RBD | 18 | 258 | IPR035979 | GO:0003676 | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 430 | 494 | - | - | |
| Pumo10g02612 | 954 | Gene3D | - | 259 | 392 | IPR012677 | - | |
| Pumo10g02612 | 954 | Gene3D | - | 2 | 134 | IPR012677 | - | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 358 | 375 | - | - | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 873 | 900 | - | - | |
| Pumo10g02612 | 954 | FunFam | - | 2 | 126 | - | - | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 755 | 769 | - | - | |
| Pumo10g02612 | 954 | MobiDBLite | consensus disorder prediction | 471 | 486 | - | - | |
| Pumo10g02612 | 954 | SUPERFAMILY | RNA-binding domain, RBD | 268 | 356 | IPR035979 | GO:0003676 | |
| Pumo10g02612 | 954 | PANTHER | RNA-BINDING MOTIF PROTEIN 14B | 16 | 954 | - | - | |
| Pumo10g02612 | 954 | SUPERFAMILY | RNA-binding domain, RBD | 497 | 727 | IPR035979 | GO:0003676 | |
| Pumo10g02612 | 954 | CDD | RRM3_RBM28_like | 497 | 578 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo10g02612 | Pumo-Chr10 | 48109979 | 48119305 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo10g02612 | 22 | 98 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 35.065 | 1.25e-07 | 52.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo10g02612 | K14573 | - | gmx:100794821 | 1659.81 |