Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02611 ATGGATCAAAACCAGCATGGTGAAGCAGCAAGAGGGATTGGTCCTCCAGCACATGGCAAGAGCGAATATCAATGTAACCCCATTATGGCACTTACAAATCCTCCAACCCAGGCCATTGGTCCTTCTGTCCCTTCCTACCCTAGAGAGCAACAATATGCTCCCCAATACATCTACCAGCCGCAGAATGAACGCTTGAAGGAACAACTCAATAACTTCTGGCAAAAACAGTGCCAGGAAATTCAGGAGACAACCAATTTTAGGACTCACAGCTTGCCTTTGGCTAGGATTAAGAAGATAATGAAGGCTGACGAGGATGTGAGCATGATATCAGCTGAGACTCCTGTGGTGTTTGCCAAAGCTTGTGAAATGTTCATTATGGAGCTCACAAAGAAGGCTTGGGCTAATGCTGAGGATCACAGCAGGAGGATACTTCAGAAAAGTGACATTGCATCTGCAATCTCAAAGACTGAAGTGTTTGATTTTCTTGATGATATTGTCCCCAAAGATGCAGGCATACCAAGAACAGGCATAGCTCCAACAGAGAATGTTGATTTAAATATGCCACCTCATCAGAATGTTGCAGGCCCTCCATATGATGCTCCAACAATGGTCATGGGAAGGCCCGTTCCTGATCTAAACCATCATGCTCCCAATTCGGATGATTGA 666 0.452 MDQNQHGEAARGIGPPAHGKSEYQCNPIMALTNPPTQAIGPSVPSYPREQQYAPQYIYQPQNERLKEQLNNFWQKQCQEIQETTNFRTHSLPLARIKKIMKADEDVSMISAETPVVFAKACEMFIMELTKKAWANAEDHSRRILQKSDIASAISKTEVFDFLDDIVPKDAGIPRTGIAPTENVDLNMPPHQNVAGPPYDAPTMVMGRPVPDLNHHAPNSDD 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02611 221 Gene3D Histone, subunit A 54 168 IPR009072 GO:0046982
Pumo10g02611 221 SUPERFAMILY Histone-fold 61 162 IPR009072 GO:0046982
Pumo10g02611 221 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 61 179 - -
Pumo10g02611 221 MobiDBLite consensus disorder prediction 1 23 - -
Pumo10g02611 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 90 153 IPR003958 -
Pumo10g02611 221 FunFam Nuclear transcription factor Y subunit gamma 56 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02611 Pumo-Chr10 48053675 48054340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02611 69 198 CCAAT-HAP5 Transcription Factor Family AT1G56170 59.231 1.79e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo10g02611 CBFD_NFYB_HMF 3.7e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02611 K08066 - gmx:100808341 302.753