Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02592 ATGGCTATTGGTCCTTCTGTCCCTTCCTACCCTATAGAGCAACCATATGCTCCCCATTACATCTACCAGCAACAGAATGAACGCTTGAAGGAACAACTCAACAACTTCTGGGCAAAACAGTGCCAAGAAATTCAGGAGACCACCAATTTCAAAATGGATCGAAACCATCATGTTCAACCAGCACAAGAAGCACAAGGCAAGAACCAATATCAATCTAACCCCATGATGGCACCTACCATTCTTCCAACTCAGACATCTGGTCCTTCTTTTTCATCATCCAACCCAAGACAGCATCCATATGATCCCCAATACATGAACCAGCTACGACAAGAACTCTTGCAGCAACAACTCAATAACTTATGGGCAAAACAGTGCCAGGAAATTGAGGAGACCACTGATTTAAGGACTCACAGCGTGCCTTTGGCTAGGATTAAAAAGATAATGAAGGCTGAAGGGGATGTGAGGATGGTATCAGCTGACACTGCTGTGGTGTTTGCCAAGGCCTGTGAAATGTTCATTATGGAGATCACTATGAGGGCTTGGGCAAATGTTGAGGAGAACCATAGGAAGACAATTAAGAAGAGTGACATTGCATCTGCAATCTCAAGGACAGATGTGTTTGATTTTCTTGTTGATACTATCCCCAGCCATGACAAAATATTAGAGCATCAAGGGTTTGTAGGCATACCAAGAACAGCCACTGCTCCAAGATGTGTTCCTTACTATCATATGCCCCCTCATCAGCAGCTTGTTCCAGGCCCTCCATATGGTGCTCCAAGAATGGTTGTGGGAATGCCCGTTCATGATCAAAATCATCCTGGGCTGCAAATCGATCCTTTTCCAACTCCAATGGGCCCCACCCCCAATCCACAAAACCCTTCTCCTAATTCGGATGATTGA 900 0.45 MAIGPSVPSYPIEQPYAPHYIYQQQNERLKEQLNNFWAKQCQEIQETTNFKMDRNHHVQPAQEAQGKNQYQSNPMMAPTILPTQTSGPSFSSSNPRQHPYDPQYMNQLRQELLQQQLNNLWAKQCQEIEETTDLRTHSVPLARIKKIMKAEGDVRMVSADTAVVFAKACEMFIMEITMRAWANVEENHRKTIKKSDIASAISRTDVFDFLVDTIPSHDKILEHQGFVGIPRTATAPRCVPYYHMPPHQQLVPGPPYGAPRMVVGMPVHDQNHPGLQIDPFPTPMGPTPNPQNPSPNSDD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02592 299 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 101 224 - -
Pumo10g02592 299 Pfam Core histone H2A/H2B/H3/H4 117 201 IPR007125 GO:0003677
Pumo10g02592 299 SUPERFAMILY Histone-fold 96 210 IPR009072 GO:0046982
Pumo10g02592 299 Gene3D Histone, subunit A 102 216 IPR009072 GO:0046982
Pumo10g02592 299 MobiDBLite consensus disorder prediction 273 299 - -
Pumo10g02592 299 FunFam Nuclear transcription factor Y subunit gamma 104 216 - -
Pumo10g02592 299 MobiDBLite consensus disorder prediction 279 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02592 Pumo-Chr10 46213289 46215747 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02592 66 266 CCAAT-HAP5 Transcription Factor Family AT1G54830 45.771 4.45e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo10g02592 CBFD_NFYB_HMF 1.1e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02592 K08066 - gmx:100807580 315.464