Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02588 ATGACCATAATGGGGTTTATCATTGGTCCTTATGTCCCATTATGCTACCCTAGAAAGCAACAATATGCTCCCCAAGACATCTACCAGCAACAACTAAACAACTTCTGGGCAAAACAGTGCCAGCAAATTGAGGAGACCACTGATTTAAGGACTCACAACTTGCCTTTGGCTAGGATTAAGAAGATCATGAAGGCTGATGGGGATGTGAGGATGGTATCAGCTGAGGCTCTTGTGGTGTTTGCCAAAGGCTATGAAATGTTCATTATGGAGCTCACCAAGAGGGCTTGGGCTAATGCTGAGGATCACAGAAGGAGGATACTTCAGAAGCGTGACATTGCATCTGCAATCTCAAAGACTGATGATGTGTTTGATTTTCTTGATGATATTGTCCACATGGATGCAGGCATACCAAGAACAGGCACTACTCCAACAGAGAATGTTGATCTAAATATGCCACCCCTCCTTAGAATGTTACAGACCCTCCATGTGATGCTCCAACAATGGTCATGGGAAGGCCCATTCTTGGTCAAAATCATCATGGGCCGCAAACCCATCCTTTTCCAACTCCAATGA 573 0.4468 MTIMGFIIGPYVPLCYPRKQQYAPQDIYQQQLNNFWAKQCQQIEETTDLRTHNLPLARIKKIMKADGDVRMVSAEALVVFAKGYEMFIMELTKRAWANAEDHRRRILQKRDIASAISKTDDVFDFLDDIVHMDAGIPRTGTTPTENVDLNMPPLLRMLQTLHVMLQQWSWEGPFLVKIIMGRKPILFQLQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02588 190 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 53 116 IPR003958 -
Pumo10g02588 190 Gene3D Histone, subunit A 16 131 IPR009072 GO:0046982
Pumo10g02588 190 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 25 134 - -
Pumo10g02588 190 FunFam Nuclear transcription factor Y subunit gamma 19 132 - -
Pumo10g02588 190 SUPERFAMILY Histone-fold 32 121 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02588 Pumo-Chr10 45842717 45843289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02588 32 171 CCAAT-HAP5 Transcription Factor Family AT1G56170 55.862 1.06e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo10g02588 CBFD_NFYB_HMF 3.5e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02588 K08066 - gmx:100808341 219.164