Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo10g02587 | ATGCTCCACAATACATCCACCAACAGCAACAACAACAACACTTGCAGCAACAACTCAACAACTTCTGGGAAAAATAGTGCAAGGAAATTGAGGAGGAGACCACTGACTTCAAGACTCAGCTTGCCTTTGGCTAGTATTAAGAAGATAATGAAGGCTGACAGGGATGTGAGGATGATATCAGCTGAGACTCCTGTGCATGGTTTTAAATTGCGATTGCGGGATGACACAATGAACCATCAAGTGTCTATAGGCGACATACTGAGAACAAGCACTACTCCAACTCCTACTGAGAATGTTCCTTACTATCATGGTGCACCTCTTCAGCAGCATGTTCCAGGCCTACAATATGGTGCTCCAAGAATGGTCATGGGAAGGCCCGTTCTCGATTAA | 390 | 0.4487 | MLHNTSTNSNNNNTCSNNSTTSGKNSARKLRRRPLTSRLSLPLASIKKIMKADRDVRMISAETPVHGFKLRLRDDTMNHQVSIGDILRTSTTPTPTENVPYYHGAPLQQHVPGLQYGAPRMVMGRPVLD | 129 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo10g02587 | 129 | Gene3D | Histone, subunit A | 2 | 70 | IPR009072 | GO:0046982 | |
| Pumo10g02587 | 129 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Pumo10g02587 | 129 | SUPERFAMILY | Histone-fold | 21 | 65 | IPR009072 | GO:0046982 | |
| Pumo10g02587 | 129 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo10g02587 | Pumo-Chr10 | 45838685 | 45839690 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo10g02587 | 40 | 79 | CCAAT-HAP5 Transcription Factor Family | AT1G54830 | 60.870 | 1.22e-08 | 49.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo10g02587 | K08066 | - | ming:122091681 | 61.2326 |