Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02585 ATGAAGAGGTCTCCAGCATCTTCTTGTTCATCATCTACTTCTTCTGTTGGGTTTGAAACCCCCATTGAAAAAAGAAGGCCTAAGCATCCAAGGAGGAATTTGAAGTCACAAAAATGCAATAAGCAGAACCAAACCACTGGTAGAAGAAGCTCTATCTATAGAGGAGTTACAAGGCATAGGTGGACAGGGAGGTTTGAAGCTCACCTATGGGATAAGAGCTCTTGGAACAACATTCAGAGCAAGAAAGGACGACAAGTTTATTTGGGGGCATATGATACTGAAGAATCTGCAGCCCGTACCTATGACCTTGCAGCCCTTAAGTACTGGGGAAAAGATGCAACCCTGAATTTCCCGATAGAAACTTATACCAAGGACCTTGAGGAAATGGACAAGGTTTCAAAAGAAGAATATTTGGCTTCTTTGCGGCGCCAAAGCAGTGGTTTTTCTAGAGGCATCTCTAAGTATCGTGGGGTTGCTAGGCATCATCATAATGGCCGCTGGGAAGCTCGCATTGGAAGAGTATGCGGAAACAAGTACCTCTACTTGGGAACATATAAAACTCAAGAGGAGGCAGCAGTGGCATATGACATGGCAGCAATAGAGTACCGTGGACTCAATGCAGTGACCAATTTTGACATAAGCAACTACATGGACAAAATAAAGAAGAAAAATGACCAAACCCAACAACAACAACAAACAGAAGCACAGACAGAAACAGTTCCCAACTCCTCTGACTCTGAAGAAGCAGAAGTAGAACAACAAACAATAACTACACCACCCCCATCTGAAAATCTGCACATGCCCCCACAGCAGCACCAAGTTCAATACACCCCCCATGTCACTCCAAGGGAAGAATCATCATCACTGGTAACTATTATGGACCATGTGCTTGACCAGGATCTGCCATGGAGCTTTATGTACACTGGCCTGTCTCAGTTCCAAGATCCATACTTGACTTTCAGCAAAGGTGATGATGATTTGGTAGGCATGTTTGATGGTGCAGGGTTTGAGGAAGACATTGATTTTCTGTTCAGCACAGAGCCTGGTGAGGCTGTGAGTGATGTCAATATGAGTGCAGTTTTGGATAGTATTGAGTGTGGAGACACAAATGGGGCTGGTGGAAGCATGGTGCATGTGGATAATAACAAGCAGAAGAAGATGCTATCATTTGCTTCTTCTTCTTCACCATCATCTACAACAACTACAGTTTCTTGTGACTATGCTCTATGA 1230 0.439 MKRSPASSCSSSTSSVGFETPIEKRRPKHPRRNLKSQKCNKQNQTTGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGRQVYLGAYDTEESAARTYDLAALKYWGKDATLNFPIETYTKDLEEMDKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGLNAVTNFDISNYMDKIKKKNDQTQQQQQTEAQTETVPNSSDSEEAEVEQQTITTPPPSENLHMPPQQHQVQYTPHVTPREESSSLVTIMDHVLDQDLPWSFMYTGLSQFQDPYLTFSKGDDDLVGMFDGAGFEEDIDFLFSTEPGEAVSDVNMSAVLDSIECGDTNGAGGSMVHVDNNKQKKMLSFASSSSPSSTTTTVSCDYAL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02585 409 FunFam AP2-like ethylene-responsive transcription factor 153 214 - -
Pumo10g02585 409 ProSiteProfiles AP2/ERF domain profile. 154 212 IPR001471 GO:0003700|GO:0006355
Pumo10g02585 409 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 32 272 - -
Pumo10g02585 409 MobiDBLite consensus disorder prediction 1 49 - -
Pumo10g02585 409 FunFam AP2-like ethylene-responsive transcription factor 51 120 - -
Pumo10g02585 409 SUPERFAMILY DNA-binding domain 51 120 IPR016177 GO:0003677
Pumo10g02585 409 ProSiteProfiles AP2/ERF domain profile. 52 118 IPR001471 GO:0003700|GO:0006355
Pumo10g02585 409 SUPERFAMILY DNA-binding domain 153 214 IPR016177 GO:0003677
Pumo10g02585 409 CDD AP2 153 214 IPR001471 GO:0003700|GO:0006355
Pumo10g02585 409 Gene3D AP2/ERF domain 153 214 IPR036955 GO:0003700|GO:0006355
Pumo10g02585 409 Gene3D AP2/ERF domain 52 120 IPR036955 GO:0003700|GO:0006355
Pumo10g02585 409 SMART rav1_2 154 218 IPR001471 GO:0003700|GO:0006355
Pumo10g02585 409 SMART rav1_2 52 124 IPR001471 GO:0003700|GO:0006355
Pumo10g02585 409 MobiDBLite consensus disorder prediction 1 19 - -
Pumo10g02585 409 MobiDBLite consensus disorder prediction 222 266 - -
Pumo10g02585 409 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Pumo10g02585 409 PRINTS Ethylene responsive element binding protein signature 194 214 IPR001471 GO:0003700|GO:0006355
Pumo10g02585 409 CDD AP2 51 119 IPR001471 GO:0003700|GO:0006355
Pumo10g02585 409 MobiDBLite consensus disorder prediction 226 266 - -
Pumo10g02585 409 Pfam AP2 domain 52 110 IPR001471 GO:0003700|GO:0006355
Pumo10g02585 409 Pfam AP2 domain 153 204 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02585 Pumo-Chr10 45525055 45529998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02585 22 216 AP2-EREBP Transcription Factor Family AT5G57390 64.615 2.25e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo10g02585 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02585 - - gmx:100789774 692.575