Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02574 ATGGGGACCCAAACTATGGGGTCTCAGGGTGGTGGTGGTGGTGGTGGTGGAGACAGTAATGGGAAACAGTCACCACTCCAGCCTCTGGTGCGGCAAAACTCAATGTACAGTCTCACACTTGATGAGGTTCAGAATCAATTGGGCGATTTGGGGAAGCCGCTAAGTAGTATGAACCTTGATGAGCTTCTAAAAAATTTGTGGACCGTCGAGGCAAGCCAGACCATTGATATGGACAATGAGGGCACAGAACAAGCTAGCCAAGCTGCTCTTCAGCGTCAGGCTAGTCTGTCATTAACTGGTGCACTAAGCAAGAAGACTGTAGATGAGGTTTGGAGAGATATCCAACAAAACAAAATCATTGAGGAGAAGAAGTTCCAAGACAGACATCCTACTTTGGGAGAAATGACATTGGAGGATTTCTTGGTGAAAGCAGGTGTTGTTGCAGATGCATCTTCTAATAGAAAGAATACTGGTACTATAGCTGGGGTTGATTCAAACGTGGCAGTACCACAGTTTCCTATGCAAGGACAGTGGATACAATATCCACAAGCACAGTATCAGCATCCACCACAAAGTTTAATGGGGATCTATATGCCTAGCCAAGGTATGGTACAGCCATTACACATGGGGCCCGGTCCTTCATTGGATGTTTCATTTGCAGATAGTCAGGCGGCATTGCAATCGCCTCTGATGGGAACAGTGTCAGATACGCAGACTCCTGGAAGAAAAAGGAGCACTCCTGAGGACATGATAGAGAAGACTGTTGAGAGGAGACAGAAGAGGATGATAAAAAACCGAGAATCTGCTGCCCGTTCAAGAGCAAGGAAACAGGCATACACAAATGAATTGGAGAATAAAGTCTCGCATCTGGAAGAGGAAAATGAAAGACTGAGGAAACGAAAGGAGCTAGAGCAGATGTTGCCATGTACACCCCCTCCTGAACCTAAATATCAACTTCGCCGAATAGCATCAGCTCCATTCTGA 984 0.4614 MGTQTMGSQGGGGGGGGDSNGKQSPLQPLVRQNSMYSLTLDEVQNQLGDLGKPLSSMNLDELLKNLWTVEASQTIDMDNEGTEQASQAALQRQASLSLTGALSKKTVDEVWRDIQQNKIIEEKKFQDRHPTLGEMTLEDFLVKAGVVADASSNRKNTGTIAGVDSNVAVPQFPMQGQWIQYPQAQYQHPPQSLMGIYMPSQGMVQPLHMGPGPSLDVSFADSQAALQSPLMGTVSDTQTPGRKRSTPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSHLEEENERLRKRKELEQMLPCTPPPEPKYQLRRIASAPF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02574 327 MobiDBLite consensus disorder prediction 242 305 - -
Pumo10g02574 327 Coils Coil 273 307 - -
Pumo10g02574 327 CDD bZIP_plant_BZIP46 257 311 - -
Pumo10g02574 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 260 275 IPR004827 GO:0003700|GO:0006355
Pumo10g02574 327 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 30 326 IPR043452 GO:0003700|GO:0045893
Pumo10g02574 327 Pfam bZIP transcription factor 257 301 IPR004827 GO:0003700|GO:0006355
Pumo10g02574 327 SUPERFAMILY Leucine zipper domain 257 302 IPR046347 GO:0003700|GO:0006355
Pumo10g02574 327 MobiDBLite consensus disorder prediction 229 327 - -
Pumo10g02574 327 Gene3D - 255 308 - -
Pumo10g02574 327 MobiDBLite consensus disorder prediction 1 31 - -
Pumo10g02574 327 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 255 307 - -
Pumo10g02574 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 255 300 IPR004827 GO:0003700|GO:0006355
Pumo10g02574 327 SMART brlzneu 253 309 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02574 Pumo-Chr10 45374983 45378906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02574 22 327 bZIP Transcription Factor Family AT3G56850 55.591 3.56e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo10g02574 bZIP_1 2.8e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02574 K14432 - gmx:100101875 539.265