Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02567 ATGCCCCAAGTTAGAGATTCTGCAATAAAGCTTTTTGGAGCAGATATTCATAATATTATTCATTTTCCCATTAAGCCAACCACTCACTTCACAGATTTACACTCTTCGACTCAGATTCAGCCTTTGCCTCAACCCATCATCATCATGAATGGACTTGAAGAATCAACTAATGATGAAGTGGATGTTCCATTGAATGAAGTATCTAGCAAACAGACTGATCCTCAAGAAGATGGTAATAGTACTCCAAACATTTACAAAAATCCTACACTGAAACTGGTGGGCAAAGTAGTTCATAGGACTAATGAACACAGGAATGCCAAAAGAGATATTGATCATCAAGAAAAAGTTTTCAAGAGGCCAGACAAGGTCCTGCCATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGGCATTTCTGTAAAAAATTGCCAAAGGTATTGGACAGCTGGGGGGACGATAAGAAATGTTCCTGTTGGGGCCGTAATACTACCAGCAGCACCTTATTCGTATTCGGGTTTTATGTCAAGCTGGGCTGACCAAAAGGAAGAGGCTTCATTGGTTGGATCTGCATTTAGTGGCATCTCATTGTCTTCATCTTCAGTTAGCAACAGTACCTGTTCTGGTAATAGGTCCCCAACATTAGGAAAACATTCTAGAGATGGAAGTACACCGGGGGAAGATGCATGA 720 0.4056 MPQVRDSAIKLFGADIHNIIHFPIKPTTHFTDLHSSTQIQPLPQPIIIMNGLEESTNDEVDVPLNEVSSKQTDPQEDGNSTPNIYKNPTLKLVGKVVHRTNEHRNAKRDIDHQEKVFKRPDKVLPCPRCNSLETKFATSTITMLTNLGISVKNCQRYWTAGGTIRNVPVGAVILPAAPYSYSGFMSSWADQKEEASLVGSAFSGISLSSSSVSNSTCSGNRSPTLGKHSRDGSTPGEDA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02567 239 ProSiteProfiles Zinc finger Dof-type profile. 124 178 IPR003851 GO:0003677|GO:0006355
Pumo10g02567 239 Pfam Dof domain, zinc finger 121 171 IPR003851 GO:0003677|GO:0006355
Pumo10g02567 239 MobiDBLite consensus disorder prediction 207 239 - -
Pumo10g02567 239 PANTHER CYCLIC DOF FACTOR 2 5 136 IPR045174 GO:0003700|GO:0006355
Pumo10g02567 239 MobiDBLite consensus disorder prediction 207 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02567 Pumo-Chr10 44992725 44995081 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02567 113 171 C2C2-Dof Transcription Factor Family AT5G39660 61.017 2.60e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo10g02567 zf-Dof 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02567 - - vun:114177215 212.616