Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo10g02554 | ATGGATCAAAACCAGCATGTTCAACCAACACAAGAAGCACAAGGCAAGAACCAATATCAATCTAACCCCATGATGGCACCTACCATTCTTCCAACTCAGACATCTGGTCCTTCTTTTTCATCATCCAACCCAAGACAGCATCCATATGATCCCCAATACATGAACCAGCTACGACAAGAACGCTTGCAGCAACAACTCAACAACTTCTGGGCAAAACAGTGCCAGGAAATTGAGGAGACCACTAATTTAAGGACTCATAGCGTGCCTTTGGCTAGGATTAAAAATATAATGAAGGCTGAAGGGGATGTGAGGATGGTATCAGCTGACGCTGCTGTGGCTAATGCTGAGGAGAACCATAGGAAGACAATTGAGAAGAGTGACATTGCATCTGCAATCTCAAGGACAGATGTGTTTGATTTTCTTGTTGATACTGTCCCCAGCCATGACAAAATATTGGAGCATCAAGGGTTTGTAGCCATACCAAGAACAAGCACTGCTCCAACTCCAACTCCAACTGAGAATGTTCCTTACTATCATGTGCCCCCTCATCAGCAGCTTGTTCCAGGCCATCCATATAGTGCTCCAAGAATGGTCGTGGGAATGCCCGTTCTTGATCAAAATCATCCTAGACTGCAAATCAATCCTTTCCCAACTCCAATGGGCCCCACCCCCAATCCACAAAACCCTTCTCCTAATTCGGACGATTGA | 708 | 0.4534 | MDQNQHVQPTQEAQGKNQYQSNPMMAPTILPTQTSGPSFSSSNPRQHPYDPQYMNQLRQERLQQQLNNFWAKQCQEIEETTNLRTHSVPLARIKNIMKAEGDVRMVSADAAVANAEENHRKTIEKSDIASAISRTDVFDFLVDTVPSHDKILEHQGFVAIPRTSTAPTPTPTENVPYYHVPPHQQLVPGHPYSAPRMVVGMPVLDQNHPRLQINPFPTPMGPTPNPQNPSPNSDD | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo10g02554 | 235 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 47 | 112 | - | - | |
| Pumo10g02554 | 235 | MobiDBLite | consensus disorder prediction | 212 | 235 | - | - | |
| Pumo10g02554 | 235 | SUPERFAMILY | Histone-fold | 47 | 141 | IPR009072 | GO:0046982 | |
| Pumo10g02554 | 235 | MobiDBLite | consensus disorder prediction | 215 | 229 | - | - | |
| Pumo10g02554 | 235 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
| Pumo10g02554 | 235 | Gene3D | Histone, subunit A | 112 | 147 | IPR009072 | GO:0046982 | |
| Pumo10g02554 | 235 | Gene3D | Histone, subunit A | 51 | 111 | IPR009072 | GO:0046982 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo10g02554 | Pumo-Chr10 | 44374715 | 44375476 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo10g02554 | 1 | 202 | CCAAT-HAP5 Transcription Factor Family | AT1G08970 | 40.000 | 5.46e-32 | 115 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo10g02554 | K08066 | - | gmx:100807580 | 268.47 |