Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02548 ATGGAAAGAATGTTCCCTCCTAAGAAGCCTTCAACTATGAATTCCCATGATAGACCTATGTGTGTGCAAGGTGACTCAGGGCTTGTCCTCACCACCGACCCGAAACCGCGCCTCCGGTGGACCGTTGAACTCCATGAACGCTTTGTTGATGCTGTTGCTCAGCTTGGAGGACCTGATAAGGCCACTCCTAAAACAATCATGAGGGTTATGGGGGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTTCAGAAATTCAGGCTTGGAAAGCAGCCCCACAAGGATTTCAATGAGCACTCGATTAAGGATGGCATGAGAGCTTCGGCTTTAGATCTTCAACGAAATATTGGTTCCTCTTCTGCCATGATTGGCCGCAACATGAACGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAATTAGAGGTTCAAAAAAATCTTCAGCTGAGGATTGAGGCTCAAGGAAAGTACATGCAGAGTATATTGGAGAAGGCTTATCACACACTTGCAGGAGAAAACATGGCCACAAACATGAAGGGTATGGGAGCTCCTCAAGGCACCACCACTGAAATGGGGGTCATGAAAGAATTTAGTTCTCTCAACAACTACCCTTCTTTTCAAGATCTCAACATTTATGCTAGTGGTGACCAACAACTTGATCATGGGTTTATGCCAACTAACAACAACAACAATAATGAGAGTTTGTTTGTGGGGAATAAGAAGAGGCCTTGCCCCTATAGTGGAAGTAGTGGAAAGAGTCCATTAATTTGGAGTGATGATCTCAGGCTTCAAGATTTGGGAGGAACAGCTAATTCATCATGCATTAGTCCTCCTCAAGATGAAATTTTCAAAGGTGATCATCACAAGTTTCTTCAGATTTCACCACCATCAATGGATAATAGTGATCCCATGTCAGAGATCTATGACACAAAGCCAATGATACTCCATGGAGAAAGTGTAGGTACTGATCAGAAGAAATTTGAGGGGTCCATCATGAAGATGGAAAGGCCATCTCCAAAAAGATCACCACTTCAACCAGAAAGGACTAGAAGTCCTATGATCAATGCTAGTTCTGTGGCACAAGGTAGAAGCTCCCCATTTGGTTGA 1113 0.4429 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNEHSIKDGMRASALDLQRNIGSSSAMIGRNMNEMQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKAYHTLAGENMATNMKGMGAPQGTTTEMGVMKEFSSLNNYPSFQDLNIYASGDQQLDHGFMPTNNNNNNESLFVGNKKRPCPYSGSSGKSPLIWSDDLRLQDLGGTANSSCISPPQDEIFKGDHHKFLQISPPSMDNSDPMSEIYDTKPMILHGESVGTDQKKFEGSIMKMERPSPKRSPLQPERTRSPMINASSVAQGRSSPFG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02548 370 Pfam MYB-CC type transfactor, LHEQLE motif 131 169 IPR025756 -
Pumo10g02548 370 MobiDBLite consensus disorder prediction 1 20 - -
Pumo10g02548 370 FunFam Myb family transcription factor 34 92 - -
Pumo10g02548 370 Gene3D - 34 92 - -
Pumo10g02548 370 MobiDBLite consensus disorder prediction 346 370 - -
Pumo10g02548 370 MobiDBLite consensus disorder prediction 330 370 - -
Pumo10g02548 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Pumo10g02548 370 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Pumo10g02548 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 254 IPR044848 GO:0003700
Pumo10g02548 370 MobiDBLite consensus disorder prediction 330 345 - -
Pumo10g02548 370 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Pumo10g02548 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02548 Pumo-Chr10 44107777 44110509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02548 4 370 G2-like Transcription Factor Family AT1G79430 55.297 3.48e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo10g02548 Myb_DNA-binding 5.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02548 - - gmx:100796268 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02548 10 44107777 44110509 Pumo10g02548 10 44107777 44110509 ECH
Pumo4g02874 4 54960414 54962780 Pumo10g02548 10 44107777 44110509 PCT