Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02546 ATGGGAAGACATTCAAGAAGCCTCATCAGTCCGTACAAGGAAGGAGCTAAAGCTGGTGGGGGAGTACGAGCTCTGGTGCAAGCGAGAGCTATGGAGGGTGCAGTACGCCCTCAGTCGCATCCGCAACAACGCGTGGAACCTCTCACCCTTGATGTGAAGAACCCGCGTAGGATCTTTGAGGGCGAGGCTCTGCTTCGCAGGATTTGCACCCCATCAAGTGGCTCCACAAAGGGTAGCGGCTATGGTTTTGCTGATAAGATCATGTCTAGTACATTAGAACAATTATGCAATACCCTCCATCTTTTACTGACATGTAGTGATGCGTGCATTCTTTTATTTAACATGATTTTAGTCCCAAATGTGATTAAGGTCATGGAAGTTGCCAGGCAGCGTGGGATTCTCATAGTTCGGAGGGTGGCTTCAGAAAGTAACATCTTGGGTGAGGGCGGTTTTGGATGTGTTTACAAGGCTCGCTTGGATCATAACTTGGATGTTGCAGTCAAAAAAGTACACTGTGAGACTCAAAATGCTGAGAGAGAATTCAAGAACGTGGTGAATTTGTTAAGCAAAATTCAACATCCGAATATAATTTCTTTACTGGGTTGTAGCATTGATGGTGACACGAGGTTTATTGTCTATGAGCTGATGCAAAATGGATCATTGGAAACCCAATTACAAGAACCTTCTCATGGCTCGGCATTGACTTGGCACATGAGGATGAAGATTGCTCTTCTTGACACAGCAAGAGGATTAGAATATCTGCATGAGCACTGTTACCCTGCAGTGATCTATAGAGATATGAAATCTTCTAATATTCTCTTGGATGCAAACTTCAATGCCAAGATAACATGCAGCAGCCAGAAACCAAATGATGATGTCAGCCTAAAGCACACAAGTTTGGCACTGCATATAGGAGCACTCTTGGTCTTGGTGAGATTCTTGTACATAGAAATTCAGTTCTTGTTACTCTTCTTGCGAATGAGTACCCTAAAGATCCTAGTTAAATAA 1008 0.4375 MGRHSRSLISPYKEGAKAGGGVRALVQARAMEGAVRPQSHPQQRVEPLTLDVKNPRRIFEGEALLRRICTPSSGSTKGSGYGFADKIMSSTLEQLCNTLHLLLTCSDACILLFNMILVPNVIKVMEVARQRGILIVRRVASESNILGEGGFGCVYKARLDHNLDVAVKKVHCETQNAEREFKNVVNLLSKIQHPNIISLLGCSIDGDTRFIVYELMQNGSLETQLQEPSHGSALTWHMRMKIALLDTARGLEYLHEHCYPAVIYRDMKSSNILLDANFNAKITCSSQKPNDDVSLKHTSLALHIGALLVLVRFLYIEIQFLLLFLRMSTLKILVK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02546 335 SUPERFAMILY Protein kinase-like (PK-like) 140 283 IPR011009 -
Pumo10g02546 335 Gene3D Transferase(Phosphotransferase) domain 1 123 285 - -
Pumo10g02546 335 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Pumo10g02546 335 Pfam Protein kinase domain 143 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02546 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Pumo10g02546 335 SMART serkin_6 140 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02546 335 ProSiteProfiles Protein kinase domain profile. 140 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g02546 335 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 141 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02546 Pumo-Chr10 43944418 43954326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02546 141 283 Receptor kinase-like Gene Family AT1G80640 58.333 5.78e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Pumo10g02546 Pkinase 2.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02546 - - gmx:100784795 255.758